Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01641 ATGTCAATGGAAATGATGGCAACGGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGGTTAGTGTTCCATACAGCAGTTTGCTAACCATAGTGACGGTTAGATGTGGACATTGTGCTAATTTGCTATCAGTTAACATGGGAGCGTCCCTTCAACCATTTCCTCCACAAGACCCTCAGTCACAGAAACCGCACCTAAGCTTTGAAGAACCAAGCAGCAAGGAACTGGGATCCTCATCTTCAAAATGTAACAAAATAGCGCCATTTGAGACAGTAGAGCATGAACAGCCAAGGATTCCTCCCATTCGTCCCACAGAAAAGAGACATCGTGTGCCTTCTGCTTATAATCGGTTCATTAAGGAGGAAATCCAGAGGATTAAGGCTAGTAATCCAGATATCAGTCACAGGGAGGCTTTCAGCTCCGCAGCAAAAAATTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGCTGGATGGTAACAGTGAAGGAAAGTTGGAGCAGGGAGAAGGTGGTGAAAAGACCAATGGATTCTACTGA 552 0.4475 MSMEMMATERVCYVHCNFCNTILAVSVPYSSLLTIVTVRCGHCANLLSVNMGASLQPFPPQDPQSQKPHLSFEEPSSKELGSSSSKCNKIAPFETVEHEQPRIPPIRPTEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNWAHFPHIHFGLKLDGNSEGKLEQGEGGEKTNGFY 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01641 183 PANTHER PROTEIN YABBY 6-RELATED 1 169 IPR006780 GO:0007275
Viun11g01641 183 Pfam YABBY protein 7 160 IPR006780 GO:0007275
Viun11g01641 183 MobiDBLite consensus disorder prediction 164 183 - -
Viun11g01641 183 CDD HMG-box_SF 114 150 - -
Viun11g01641 183 Gene3D High mobility group box domain 98 155 IPR036910 -
Viun11g01641 183 SUPERFAMILY HMG-box 105 153 IPR036910 -
Viun11g01641 183 MobiDBLite consensus disorder prediction 57 111 - -
Viun11g01641 183 FunFam axial regulator YABBY 5-like 98 156 - -
Viun11g01641 183 MobiDBLite consensus disorder prediction 57 90 - -
Viun11g01641 183 MobiDBLite consensus disorder prediction 92 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01641 Viun-Chr11 32656265 32663308 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01641 1 183 C2C2-YABBY Transcription Factor Family AT1G08465 64.362 7.34e-82 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Viun11g01641 YABBY 1.8e-70 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01641 K25796 - gmx:100500026 332.413