Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01640 ATGTCAATGGAAATGATGGCAACGGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGGTTAGTGTTCCATACAGCAGTTTGCTAACCATAGTGACGGTTAGATGTGGACATTGTGCTAATTTGCTATCAGTTAACATGGGAGCGTCCCTTCAACCATTTCCTCCACAAGACCCTCAGAAACCGCACCTAAGCTTTGAAGAACCAAGCAGCAAGGAACTGGGATCCTCATCTTCAAAATGTAACAAAATAGCGCCATTTGAGACAGTAGAGCATGAACAGCCAAGGATTCCTCCCATTCGTCCCACAGAAAAGAGACATCGTGTGCCTTCTGCTTATAATCGGTTCATTAAGGAGGAAATCCAGAGGATTAAGGCTAGTAATCCAGATATCAGTCACAGGGAGGCTTTCAGCTCCGCAGCAAAAAATTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGCTGGATGGTAACAGTGAAGGAAAGTTGGAGCAGGGAGAAGGTGGTGAAAAGACCAATGGATTCTACTGA 546 0.4469 MSMEMMATERVCYVHCNFCNTILAVSVPYSSLLTIVTVRCGHCANLLSVNMGASLQPFPPQDPQKPHLSFEEPSSKELGSSSSKCNKIAPFETVEHEQPRIPPIRPTEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNWAHFPHIHFGLKLDGNSEGKLEQGEGGEKTNGFY 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01640 181 FunFam axial regulator YABBY 5-like 96 154 - -
Viun11g01640 181 Gene3D High mobility group box domain 96 153 IPR036910 -
Viun11g01640 181 SUPERFAMILY HMG-box 103 151 IPR036910 -
Viun11g01640 181 CDD HMG-box_SF 112 148 - -
Viun11g01640 181 MobiDBLite consensus disorder prediction 161 181 - -
Viun11g01640 181 Pfam YABBY protein 7 158 IPR006780 GO:0007275
Viun11g01640 181 PANTHER PROTEIN YABBY 6-RELATED 1 167 IPR006780 GO:0007275
Viun11g01640 181 MobiDBLite consensus disorder prediction 57 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01640 Viun-Chr11 32656262 32663308 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01640 1 181 C2C2-YABBY Transcription Factor Family AT1G08465 64.894 6.41e-81 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Viun11g01640 YABBY 1.1e-69 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01640 K25796 - gmx:100500091 331.643