Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01639 ATGTCAATGGAAATGATGGCAACGGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGGTTAGTGTTCCATACAGCAGTTTGCTAACCATAGTGACGGTTAGATGTGGACATTGTGCTAATTTGCTATCAGTTAACATGGGAGCGTCCCTTCAACCATTTCCTCCACAAGACCCTCAGTCACAGAAACCGCACCTAAGCTTTGAAGAACCAAGCAGCAAGGAACTGGGATCCTCATCTTCAAAATGTAACAAAATAGCGCCATTTGAGACAGTAGAGCATGAACAGCCAAGGATTCCTCCCATTCGTCCCACAGAAAAGAGACATCGTGTGCCTTCTGCTTATAATCGGTTCATTAAGGAGGAAATCCAGAGGATTAAGGCTAGTAATCCAGATATCAGTCACAGGGAGGCTTTCAGCTCCGCAGCAAAAAATGTTTATATGTGTACGCAGTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGCTGGATGGTAACAGTGAAGGAAAGTTGGAGCAGGGAGAAGGTGGTGAAAAGACCAATGGATTCTACTGA 570 0.4456 MSMEMMATERVCYVHCNFCNTILAVSVPYSSLLTIVTVRCGHCANLLSVNMGASLQPFPPQDPQSQKPHLSFEEPSSKELGSSSSKCNKIAPFETVEHEQPRIPPIRPTEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNVYMCTQWAHFPHIHFGLKLDGNSEGKLEQGEGGEKTNGFY 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01639 189 Pfam YABBY protein 7 166 IPR006780 GO:0007275
Viun11g01639 189 SUPERFAMILY HMG-box 105 146 IPR036910 -
Viun11g01639 189 CDD HMG-box_SF 114 148 - -
Viun11g01639 189 MobiDBLite consensus disorder prediction 57 86 - -
Viun11g01639 189 PANTHER PROTEIN YABBY 6-RELATED 1 175 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01639 Viun-Chr11 32656260 32663308 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01639 1 189 C2C2-YABBY Transcription Factor Family AT1G08465 62.371 3.69e-79 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Viun11g01639 YABBY 1.9e-66 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01639 K25796 - gmx:100500026 325.865