Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01638 ATGTCAATGGAAATGATGGCAACGGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGGTTAGTGTTCCATACAGCAGTTTGCTAACCATAGTGACGGTTAGATGTGGACATTGTGCTAATTTGCTATCAGTTAACATGGGAGCGTCCCTTCAACCATTTCCTCCACAAGACCCTCAGAAACCGCACCTAAGCTTTGAAGAACCAAGCAGCAAGGAACTGGGATCCTCATCTTCAAAATGTAACAAAATAGCGCCATTTGAGACAGTAGAGCATGAACAGCCAAGGATTCCTCCCATTCGTCCCACAGAAAAGAGACATCGTGTGCCTTCTGCTTATAATCGGTTCATTAAGGAGGAAATCCAGAGGATTAAGGCTAGTAATCCAGATATCAGTCACAGGGAGGCTTTCAGCTCCGCAGCAAAAAATGTTTATATGTGTACGCAGTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGCTGGATGGTAACAGTGAAGGAAAGTTGGAGCAGGGAGAAGGTGGTGAAAAGACCAATGGATTCTACTGA 564 0.445 MSMEMMATERVCYVHCNFCNTILAVSVPYSSLLTIVTVRCGHCANLLSVNMGASLQPFPPQDPQKPHLSFEEPSSKELGSSSSKCNKIAPFETVEHEQPRIPPIRPTEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNVYMCTQWAHFPHIHFGLKLDGNSEGKLEQGEGGEKTNGFY 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01638 187 CDD HMG-box_SF 112 146 - -
Viun11g01638 187 PANTHER PROTEIN YABBY 6-RELATED 1 173 IPR006780 GO:0007275
Viun11g01638 187 MobiDBLite consensus disorder prediction 57 84 - -
Viun11g01638 187 SUPERFAMILY HMG-box 103 144 IPR036910 -
Viun11g01638 187 Pfam YABBY protein 7 164 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01638 Viun-Chr11 32656257 32663308 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01638 1 187 C2C2-YABBY Transcription Factor Family AT1G08465 62.887 3.71e-78 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Viun11g01638 YABBY 1.1e-65 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01638 K25796 - gmx:100500091 325.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03128 5 42374487 42381685 Viun11g01638 11 32656257 32663308 PCT