Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01635 ATGAGTGATATAAGGAAGTGGTTCATGAAATCACATGACAAGGGCAACAATGCCGCTCCCTCCAAGCCTTCCAATCAATCCAAGCCTTCTTCGGATAAACCCCAGTCTGATAAAAATGTGGCTGGAGGTCAAGAAAGCTCAGGGAGGAGGGTAACTAGCAAATATTTTAACACAAACAAGCAAAAGGTGAAAGATGAGAAAGAAACGCAGGAGTTACCTGCTAAAAGAAAGAATGTGAAGGACAGTGAAGATATACCACAGCCTAAGAAAATTCATGAAGATGTTGGAGATGATTCTGTCTTGCCCACCAATAAAAAGAAATTAGCTGAGGCCACTCCGACAAAAAAATTGAAGAGTGAATCAGGTAGGGGAATTCCCCAAAAACCTGCAGTTTTGGAAGAAAGTGACGAAGATGACAAAGATGCTGTGTCTGCTGTTAAATCTGCTGGAAGGGGTGGTGGTGGAAGGGGAGCAGCTGGGCGATCAAGTGGTGGGAGAGGTAGAGGAGGTGGTAGAGGTGGATTCATGAATTTTGGAGAAAGAAAAGATCCCCCACACAAAGGAGAAAAGGAAGTCCCTGAAGGTGCTCCTAACTGTTTAGCTGGCTTGACTTTTGTGATTAGTGGAACACTGGACAGTTTGGAACGTGAAGAAGCTGAAGATTTGATTAAACGCCATGGTGGTCGAGTCACCGGATCAGTCAGCAAGAAAACGAATTATTTGCTATGCGATGAAGACATTGGGGGGCGGAAGTCTGAAAAGGCCAAAGAGCTAGGGACTTCCTTTCTCACGGAGGATGGATTGTTTGATATGATTCGTGCATCAAAACCTGCAAAAGCTCCTTCACAGGCAGAAAAGAAACCTGTGAATAAGGCTGGTGCAGTAGCATCCCCGTCAAAAGTTTCTCCAAAATCGCAAGTAAAGGTCCCTCTGTCTTCACGCTCACCTGCTAAGCAAGCTAAGCCAAAGGCTGCTACTACTGTTCAATCTTCTGTGATGTGGACAGAGAAATATCGACCTAAAGATCCAAAGGATGTCATAGGGAACCAGTCACTTATTGTTCAACTACGTAACTGGTTGAAAGCTTGGCATGAACAATTTTTGGACACTGGTAACAAAAAAAAGGGTAAAAAGCAAAATGACTCTGGTTTGAAAAAAGCTGTCTTGTTAAGTGGAACCCCTGGTATAGGGAAAACAACTTCAGCAAAGTTGGTCTGTCAGGAGCTTGGTTTCCAAGCCATAGAGGTTAATGCTAGTGATAGCCGTGGAAAAGCTGATAACAAAATTGAGAAAGGAATTAGTGGAAGCAAGACAAATTCTGTTAAGGAGCTTGTAACCAATGAGTCTATTGGTGCTAATATGGAACGGTCCAAGCTTTCCAAATCTGTGCTCATTATGGATGAGGTTGATGGGATGTCAGCTGGTGATAGGGGTGGTGTTGCTGATCTTATTGCTTCCATCAAGATATCGAAAATTCCTATTATCTGCATTTGCAATGACCGTTACAGCCAGAAACTTAAAAGCCTTGTGAACTACTGTTTGCTTCTAAGTTTTCGGAAGCCTACAAAGCAGCAGATGGCGAAGAGGTTGATGGATGTTGCAAAGTCTGAAGGGCTTCAAGTCAATGAGATTGCTCTTGAGGAACTGGCAGAAAGAGTTAATGGAGATATGCGGATGGCAGTAAATCAGTTACAGTATATGAGCCTCTCTATGTCAACTATCAATTATGATGACATTAGACAACGCTTTCTTACCAATGCAAAGGATGAAGACATTTCACCATTCACGGCTGTTGATAAGCTTTTTGGTTTTAATGCTGGGAAGTTGAAAATGGATGAGAGGATAAATCTTAGCATGAGTGATCCTGATCTTGTTCCTCTTCTTATTCAGGAAAATTATATTAATTATAGACCAAGCTCGACTGGTAAGGATGACAATGGGATAAAACGCATGAACCTGATTGCCCGTGCTGCTGAATCTATTGCTGATGGGGATATAGTGAATGTTCAGATTCGCAGATATCGACAGTGGCAGCTCTCTCAAGCTAGTTGTACAGCAACATGCATAATTCCTGCATCATTGTTGCATGGGCAAAGAGAAATACTTGAACAGGGAGAACGCAATTTCAACCGGTTTGGTGGGTGGCTTGGGAAAAACTCGACAATGGGCAAAAACTATAGGCTTTTGGACGATCTTCATGTTCATATTCTTGCTTCTCGTGAATCTAGCTCAGGAAGGGATACCATTCGCATGGAATACCTTACTCTTATTCTTAAACGATTGACTGAACCCCTACGAACCCTGCCTAAGGCTGAAGCGGTTCAACAAGTTGTGGAATTCATGAATACGTACTCTATCAGTCAGGAAGATTTTGATACTATAGTAGAGTTATCAAAATTCAAGGGTCAGCCTAATCCACTAGATGGCATACAGCCTGCCGTTAAGTCAGCTTTGACAAAAGCCTACAAAGAGCAAAGCAAATCTCGGGTGGTTCGAATTGCCGACCAAATCACACTTCCTGGTATAAAGAAGGCCCCTAAGAAGCGGATTGCTGCTATACTTGAACCAGCCGAGGAAGGAGGCGAAAAGGGTGAAGATGCCACCTTGGACGAGAGTGAAGAAGAGAACACCTCTGATACAGAAGAGTTGGAAGGCGGCATCACCAAGGGTGAGAAGCTGCAATCAGAACTTCAAAGCTTGAATTCAAAAGCCATGCAAGTAGAGTTGGAACTGAAGGGAACGGGTAAATCGAGTTCCAAGAAGGCATCAGGTGGTAGAGGTAAAGGTGCTTCTGCATCTGGGAAGAAGGCTGCTCAAGCTCCAAAAAGAAAAAGGTGA 2838 0.4331 MSDIRKWFMKSHDKGNNAAPSKPSNQSKPSSDKPQSDKNVAGGQESSGRRVTSKYFNTNKQKVKDEKETQELPAKRKNVKDSEDIPQPKKIHEDVGDDSVLPTNKKKLAEATPTKKLKSESGRGIPQKPAVLEESDEDDKDAVSAVKSAGRGGGGRGAAGRSSGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPNCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSEKAKELGTSFLTEDGLFDMIRASKPAKAPSQAEKKPVNKAGAVASPSKVSPKSQVKVPLSSRSPAKQAKPKAATTVQSSVMWTEKYRPKDPKDVIGNQSLIVQLRNWLKAWHEQFLDTGNKKKGKKQNDSGLKKAVLLSGTPGIGKTTSAKLVCQELGFQAIEVNASDSRGKADNKIEKGISGSKTNSVKELVTNESIGANMERSKLSKSVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLMDVAKSEGLQVNEIALEELAERVNGDMRMAVNQLQYMSLSMSTINYDDIRQRFLTNAKDEDISPFTAVDKLFGFNAGKLKMDERINLSMSDPDLVPLLIQENYINYRPSSTGKDDNGIKRMNLIARAAESIADGDIVNVQIRRYRQWQLSQASCTATCIIPASLLHGQREILEQGERNFNRFGGWLGKNSTMGKNYRLLDDLHVHILASRESSSGRDTIRMEYLTLILKRLTEPLRTLPKAEAVQQVVEFMNTYSISQEDFDTIVELSKFKGQPNPLDGIQPAVKSALTKAYKEQSKSRVVRIADQITLPGIKKAPKKRIAAILEPAEEGGEKGEDATLDESEEENTSDTEELEGGITKGEKLQSELQSLNSKAMQVELELKGTGKSSSKKASGGRGKGASASGKKAAQAPKRKR 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01635 945 Pfam Replication factor RFC1 C terminal domain 661 823 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Viun11g01635 945 MobiDBLite consensus disorder prediction 276 328 - -
Viun11g01635 945 MobiDBLite consensus disorder prediction 854 945 - -
Viun11g01635 945 Gene3D BRCT domain 172 274 IPR036420 -
Viun11g01635 945 FunFam Replication factor C subunit 1 171 274 - -
Viun11g01635 945 SUPERFAMILY BRCT domain 195 276 IPR036420 -
Viun11g01635 945 FunFam Replication factor C subunit 1 521 592 - -
Viun11g01635 945 MobiDBLite consensus disorder prediction 59 117 - -
Viun11g01635 945 FunFam Replication factor C subunit 1 593 702 - -
Viun11g01635 945 MobiDBLite consensus disorder prediction 1 196 - -
Viun11g01635 945 MobiDBLite consensus disorder prediction 130 145 - -
Viun11g01635 945 Gene3D - 332 520 IPR027417 -
Viun11g01635 945 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 17 921 - -
Viun11g01635 945 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 332 581 IPR027417 -
Viun11g01635 945 PIRSF RFC1 1 924 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Viun11g01635 945 SMART BRCT_7 197 275 IPR001357 -
Viun11g01635 945 ProSiteProfiles BRCT domain profile. 195 276 IPR001357 -
Viun11g01635 945 MobiDBLite consensus disorder prediction 864 881 - -
Viun11g01635 945 MobiDBLite consensus disorder prediction 179 193 - -
Viun11g01635 945 CDD AAA 385 484 - -
Viun11g01635 945 MobiDBLite consensus disorder prediction 299 328 - -
Viun11g01635 945 MobiDBLite consensus disorder prediction 17 58 - -
Viun11g01635 945 SMART AAA_5 384 522 IPR003593 GO:0016887
Viun11g01635 945 Pfam ATPase family associated with various cellular activities (AAA) 388 487 IPR003959 GO:0005524|GO:0016887
Viun11g01635 945 Gene3D - 521 591 - -
Viun11g01635 945 SUPERFAMILY post-AAA+ oligomerization domain-like 592 737 IPR008921 GO:0003677|GO:0006260
Viun11g01635 945 FunFam Replication factor C subunit 1 332 520 - -
Viun11g01635 945 Gene3D - 593 702 - -
Viun11g01635 945 Pfam BRCA1 C Terminus (BRCT) domain 197 272 IPR001357 -
Viun11g01635 945 CDD BRCT_RFC1 195 273 - -
Viun11g01635 945 Coils Coil 890 910 - -
Viun11g01635 945 CDD HLD_clamp_RFC 521 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01635 Viun-Chr11 32614853 32626944 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01635 1 903 Core DNA Replication Machinery Family AT5G22010 68.013 0.0 1131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01635 K10754 - gmx:100790070 1511.89