Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01611 ATGGTGGATGATGAGATATCACCCAAATCAGAAGACATAAGAGCTGAGAATAAGCTTGTTGTTCTTCAAGCTGAGCTTGAGAGAATGAAGGGGGAGAATCAAAAGTTGAGAGACGCGCTTCATCAGGTTAACGTCAATTACGATGCACTTCAGATGCATTTCATGAATTTGATGCAGCAGAAGGGCGAGGGAGTTGAAGAACAAGAAGTGATTGGTGGAATGTTAGAAGAGAAGAAGCAAGGTGAGAGTGGCGGGGTATTGGTGCCAAGACAGTTCATGGATCTTGGATTGGCTACTAATGCTGACACTGACGAACCCTCTTCTTCATCAGGGGGAAGAAGCCAAGATCGATCAGGATCACCCAACGCAGAAGTGGCTTCCAAGGAATTAGGGACCAGTAAGAATGAGAATGTTAATGATGAAGGGTTTGAAAAGGAGAAGAAGGAATATGGTAGAGGGGGTGAAAGTGAGGATAGTCCCTCAGGCCATGCTTTTGCTGGGGATAAAGTTCCAAGGTTCAGTCCTCAGAGGAATAACGTTGAACAGGCTGAGGCAACCATGAGGAAGGCAAGAGTTTCTGTTAGAGCTCGATCAGAAGCACCCATGATCACCGATGGGTGTCAATGGAGAAAGTATGGGCAGAAAATGGCCAAAGGAAACCCATGTCCTAGAGCTTATTATAGGTGTACCATGGCTGTTGGTTGCCCAGTTAGAAAACAGGTACAAAGGTGTGTTGAAGATCGAACAGTCCTGAACACAACCTACGAAGGGAATCACAACCACCCTTTGCCACCAGCAGCTATGGCAATGGCACAAACCACTTCCTCAGCAGCAAGAATGCTTCTTTCTGGGTCAATGTCTAGTGCTGACAGCATGATGAATGCCAACTTACTCACAAGAGCACTCCTTCCTTGTTCTTCAAGCATGGCTACTATCTCAGCATCTGCTCCATTCCCAACTGTTACATTGGACCTAACACAATCTCCAAACCCTCTACACTTCCCAAGGCACCCAAACCAGTTACAGATTCCCCTCCAAGGTGTTCCTCAGAGTTTTTCAAACTCCCCAGCCTCTTTAATGCCTCAGATTTTTGGACAAGCACTCTACAACCAATCAAAGTTTTCTGGGCTTCAAATGTCACATGATGCAGATCCTTCACAATTTGGAAACCACCCTCAGCAGGTACCACCACACCTCAGTGAAACAGTTAGTGCTGCCATTGCTGTTGATCCAAACTTCACTGCAGCTTTGGCAGCAGCTATCACTTCCATTATTGGTGGCGCTCAGCAGCACAACAACAGTAATAATACTAACAATAATGGAAACATGACCGCCAACAATGGCAATGGCAACATCACGAGTAGCAACAACAACAACGGAAAGCAATAA 1389 0.4579 MVDDEISPKSEDIRAENKLVVLQAELERMKGENQKLRDALHQVNVNYDALQMHFMNLMQQKGEGVEEQEVIGGMLEEKKQGESGGVLVPRQFMDLGLATNADTDEPSSSSGGRSQDRSGSPNAEVASKELGTSKNENVNDEGFEKEKKEYGRGGESEDSPSGHAFAGDKVPRFSPQRNNVEQAEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCVEDRTVLNTTYEGNHNHPLPPAAMAMAQTTSSAARMLLSGSMSSADSMMNANLLTRALLPCSSSMATISASAPFPTVTLDLTQSPNPLHFPRHPNQLQIPLQGVPQSFSNSPASLMPQIFGQALYNQSKFSGLQMSHDADPSQFGNHPQQVPPHLSETVSAAIAVDPNFTAALAAAITSIIGGAQQHNNSNNTNNNGNMTANNGNGNITSSNNNNGKQ 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01611 462 Gene3D WRKY domain 188 265 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun11g01611 462 Coils Coil 12 46 - -
Viun11g01611 462 MobiDBLite consensus disorder prediction 134 156 - -
Viun11g01611 462 ProSiteProfiles WRKY domain profile. 198 264 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun11g01611 462 SUPERFAMILY WRKY DNA-binding domain 196 264 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun11g01611 462 Pfam WRKY DNA -binding domain 205 262 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun11g01611 462 MobiDBLite consensus disorder prediction 99 180 - -
Viun11g01611 462 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 6 438 IPR044810 GO:0003700
Viun11g01611 462 MobiDBLite consensus disorder prediction 101 133 - -
Viun11g01611 462 FunFam probable WRKY transcription factor 31 188 265 - -
Viun11g01611 462 SMART WRKY_cls 203 263 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun11g01611 462 MobiDBLite consensus disorder prediction 378 397 - -
Viun11g01611 462 MobiDBLite consensus disorder prediction 432 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01611 Viun-Chr11 32522485 32524805 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01611 1 439 WRKY Transcription Factor Family AT1G62300 51.435 7.68e-125 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun11g01611 WRKY 1.8e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01611 - - gmx:100797998 575.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g01611 11 32522485 32524805 Viun6g02266 6 28234010 28236735 ECH
Viun11g01611 11 32522485 32524805 Viun11g01611 11 32522485 32524805 ECH
Viun5g03098 5 42098657 42101741 Viun11g01611 11 32522485 32524805 PCT