Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01610 ATGGTTAGAGGTGGTGGACTCTCCATGGATTCAGATCCAATTGGGAGCTTCTTCCTCCACAAGCCTATTGTTCTTAACTCTTTCCCCGAAGACACAAACCACCACAAGTGGAAACTTAGTCCCCACAACAACATCCACACAATCCCCTTCCAAGTCAACCTTAGCTCTTCTACAAACAATAATCATCACTCTCCCCCACCACCCCTCCACAACACAACCGAGATGGACTTCTTCTCCGACAATAACAACAACGACAACGTTAACAACGACAACGTTTCTGCTTCTGCCTCTAATCATCATCATTCCACCACCCCACCTACGTTGGAATTCAAACTAAACACTAGGCTGAATCTTCTTACTACCAACACCAGAAGTGATCAATCTATGGTGGATGATGAGATATCACCCAAATCAGAAGACATAAGAGCTGAGAATAAGCTTGTTGTTCTTCAAGCTGAGCTTGAGAGAATGAAGGGGGAGAATCAAAAGTTGAGAGACGCGCTTCATCAGGTTAACGTCAATTACGATGCACTTCAGATGCATTTCATGAATTTGATGCAGCAGAAGGGCGAGGGAGTTGAAGAACAAGAAGTGATTGGTGGAATGTTAGAAGAGAAGAAGCAAGGTGAGAGTGGCGGGGTATTGGTGCCAAGACAGTTCATGGATCTTGGATTGGCTACTAATGCTGACACTGACGAACCCTCTTCTTCATCAGGGGGAAGAAGCCAAGATCGATCAGGATCACCCAACGCAGAAGTGGCTTCCAAGGAATTAGGGACCAGTAAGAATGAGAATGTTAATGATGAAGGGTTTGAAAAGGAGAAGAAGGAATATGGTAGAGGGGGTGAAAGTGAGGATAGTCCCTCAGGCCATGCTTTTGCTGGGGATAAAGTTCCAAGGTTCAGTCCTCAGAGGAATAACGTTGAACAGGCTGAGGCAACCATGAGGAAGGCAAGAGTTTCTGTTAGAGCTCGATCAGAAGCACCCATGATCACCGATGGGTGTCAATGGAGAAAGTATGGGCAGAAAATGGCCAAAGGAAACCCATGTCCTAGAGCTTATTATAGGTGTACCATGGCTGTTGGTTGCCCAGTTAGAAAACAGGTACAAAGGTGTGTTGAAGATCGAACAGTCCTGAACACAACCTACGAAGGGAATCACAACCACCCTTTGCCACCAGCAGCTATGGCAATGGCACAAACCACTTCCTCAGCAGCAAGAATGCTTCTTTCTGGGTCAATGTCTAGTGCTGACAGCATGATGAATGCCAACTTACTCACAAGAGCACTCCTTCCTTGTTCTTCAAGCATGGCTACTATCTCAGCATCTGCTCCATTCCCAACTGTTACATTGGACCTAACACAATCTCCAAACCCTCTACACTTCCCAAGGCACCCAAACCAGTTACAGATTCCCCTCCAAGGTGTTCCTCAGAGTTTTTCAAACTCCCCAGCCTCTTTAATGCCTCAGATTTTTGGACAAGCACTCTACAACCAATCAAAGTTTTCTGGGCTTCAAATGTCACATGATGCAGATCCTTCACAATTTGGAAACCACCCTCAGCAGGTACCACCACACCTCAGTGAAACAGTTAGTGCTGCCATTGCTGTTGATCCAAACTTCACTGCAGCTTTGGCAGCAGCTATCACTTCCATTATTGGTGGCGCTCAGCAGCACAACAACAGTAATAATACTAACAATAATGGAAACATGACCGCCAACAATGGCAATGGCAACATCACGAGTAGCAACAACAACAACGGAAAGCAATAA 1773 0.4569 MVRGGGLSMDSDPIGSFFLHKPIVLNSFPEDTNHHKWKLSPHNNIHTIPFQVNLSSSTNNNHHSPPPPLHNTTEMDFFSDNNNNDNVNNDNVSASASNHHHSTTPPTLEFKLNTRLNLLTTNTRSDQSMVDDEISPKSEDIRAENKLVVLQAELERMKGENQKLRDALHQVNVNYDALQMHFMNLMQQKGEGVEEQEVIGGMLEEKKQGESGGVLVPRQFMDLGLATNADTDEPSSSSGGRSQDRSGSPNAEVASKELGTSKNENVNDEGFEKEKKEYGRGGESEDSPSGHAFAGDKVPRFSPQRNNVEQAEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCVEDRTVLNTTYEGNHNHPLPPAAMAMAQTTSSAARMLLSGSMSSADSMMNANLLTRALLPCSSSMATISASAPFPTVTLDLTQSPNPLHFPRHPNQLQIPLQGVPQSFSNSPASLMPQIFGQALYNQSKFSGLQMSHDADPSQFGNHPQQVPPHLSETVSAAIAVDPNFTAALAAAITSIIGGAQQHNNSNNTNNNGNMTANNGNGNITSSNNNNGKQ 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01610 590 ProSiteProfiles WRKY domain profile. 326 392 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun11g01610 590 Coils Coil 140 174 - -
Viun11g01610 590 FunFam probable WRKY transcription factor 31 316 393 - -
Viun11g01610 590 SUPERFAMILY WRKY DNA-binding domain 324 392 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun11g01610 590 SMART WRKY_cls 331 391 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun11g01610 590 Pfam WRKY DNA -binding domain 333 390 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun11g01610 590 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 118 565 IPR044810 GO:0003700
Viun11g01610 590 Gene3D WRKY domain 316 393 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun11g01610 590 MobiDBLite consensus disorder prediction 262 284 - -
Viun11g01610 590 MobiDBLite consensus disorder prediction 227 309 - -
Viun11g01610 590 MobiDBLite consensus disorder prediction 506 525 - -
Viun11g01610 590 MobiDBLite consensus disorder prediction 560 590 - -
Viun11g01610 590 MobiDBLite consensus disorder prediction 229 261 - -
Viun11g01610 590 MobiDBLite consensus disorder prediction 53 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01610 Viun-Chr11 32522485 32525084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01610 74 567 WRKY Transcription Factor Family AT1G62300 49.705 1.51e-130 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun11g01610 WRKY 2.5e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01610 - - gmx:100797998 674.855