Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01609 ATGGGGTGGCAAAGAGGCCACACTATAGGCCGAGGCTCATCAGCCACCGTCTCCACCGCCACCTGCTGCGCCGGTGGCGGTGTCTTTGCGGTGAAGTCGGCGGAGGTGTCTCAATCGGAGTGTTTGAAAAGGGAGCAGAAGATTCTGTCCTCTCTGAGTAGTCCTTACGTGGTTGCGTACAAAGGGTGTGACGTTACAATGGACAACAACAAGCTCTTGTTCAACCTCTTCATGGAGTACATGCCCTTTGGCACGGTTGCTCAGGCGACTCGCCGGCACGGTGGGAGGCTCGAGGAAGCGGCTATGGCACGCTACACCAGGCAGATTGTGCAGGGGCTAGAGTACTTGCATTCAAAAGAGTTGGTGCATTGCGACATCAAGGGTGCTAATATCTTAATCGGTGAAGATGGGGTGAAGATTGGAGACTTGGGGTGTGCCAAGAGTGTGGTGGATTCCGCGGTGGTGATCGGCGGCACGCCGATGTTCATGGCGCCGGAGGTGGCGCGTGGGGAGGAGCAAGGGTGCGCCAGTGACATTTGGTCACTTGGGTGCACTGTGGTTGAAATGGCCACGGGAAATGCACCATGGCCGAGTGTGGAAGACCCTTTTTCGGTGCTTTATCGTATTGCATATTCCGGTGAAGTGCCTGAGATTCCTTGTTTTCTATCTGAGGAAGCAAAGGATTTTTTGGGGAAGTGCTTGAGGAGGAATCCGGAAGAGAGATGGAAGGCCAGTGAACTTTTGAAGCATCCATTTATTGGAAAATCATGTTCCAATAAGAATAAGGAAGTATTGGAATCTAATTCAAGCAGCTCCCCAACTAGTGTTCTTGAGCCATGCTTTTGGAGGTCTGTGGAAGAGTCAGAAAGTGTTGGCGATTTGATTCACAACCCAAGAAAGTTTGAACTTTTTGCTGCTGGGAGGGTCAGAATGTTGGCTCTGTCTTCTGGGGTACCCTGTTGGGCACAACATGATGATGAAGATTGGATCACGGCCAGAGGGAATGGAGGGAAAGGTTTCGGCAATGGTGGGGCAGGGACAGCTTCTGGTAGTCATGAGTTGTCTCACTAG 1071 0.5191 MGWQRGHTIGRGSSATVSTATCCAGGGVFAVKSAEVSQSECLKREQKILSSLSSPYVVAYKGCDVTMDNNKLLFNLFMEYMPFGTVAQATRRHGGRLEEAAMARYTRQIVQGLEYLHSKELVHCDIKGANILIGEDGVKIGDLGCAKSVVDSAVVIGGTPMFMAPEVARGEEQGCASDIWSLGCTVVEMATGNAPWPSVEDPFSVLYRIAYSGEVPEIPCFLSEEAKDFLGKCLRRNPEERWKASELLKHPFIGKSCSNKNKEVLESNSSSSPTSVLEPCFWRSVEESESVGDLIHNPRKFELFAAGRVRMLALSSGVPCWAQHDDEDWITARGNGGKGFGNGGAGTASGSHELSH 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01609 356 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Viun11g01609 356 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 287 - -
Viun11g01609 356 Pfam Protein kinase domain 4 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g01609 356 FunFam Mitogen-activated protein kinase kinase kinase 17 2 308 - -
Viun11g01609 356 MobiDBLite consensus disorder prediction 332 356 - -
Viun11g01609 356 ProSiteProfiles Protein kinase domain profile. 3 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g01609 356 SMART serkin_6 3 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g01609 356 Gene3D Transferase(Phosphotransferase) domain 1 2 309 - -
Viun11g01609 356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Viun11g01609 356 SUPERFAMILY Protein kinase-like (PK-like) 3 264 IPR011009 -
Viun11g01609 356 CDD STKc_MAPKKK 3 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01609 Viun-Chr11 32505379 32506724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01609 1 335 MAP Kinase Kinase Kinase AT1G05100 50.565 1.96e-112 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Viun11g01609 Pkinase 7.5e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01609 K20716 - gmx:100819665 566.614