Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01574 ATGTTAATTCTAGCACGAGCATTCTCCCTGGCATTGACCTGCAAGTCATTTTGCACAGCACAAATTGCAGTGCGTTTCTTGGAACAATGGAAGTTGATGGAGAATGATGTGGTTGCTGTTGTTGGTCCACTGTCATCTGGAATAGCTCATATAATCTCTCATGTTGTTAATGAACTCCATGTACCTCTTCTGTCGTTTGGGGCTACTGACCCCACTCTATCTTCTCTACAGTACCCTTATTTCATTCGCACTACTCAGAATGATTATTTTCAGATGTATGCAGTTTCAGCCTTTATTAATTATCACAGATGGAGGGAGGTAATTGCAATCTATGTAGATGATGACAATGGCAGGAATGGAGTTTCTGTATTGGGTGATGCACTGTCAAAGAAACGTTCCAAGATCTCTTACAAGGCTGCGTTTTCACCTGGGGCATCAGAAAGTGATATCAGTGACTTGTTGAATGAAGTGAACTTGATGGAATCACGGGTCTATGTTCTGCATGTGAATCCTGATACTGGTTTAGCAATTTTCTCTATTGCCAAGAAGCTTGGAATGATGGGAAGTGGCTATGTTTGGATTGCAACAGATTGGCTTCATTCAGTGCTGGATTCTTCAGAGTTACCTGATCCTGACACAATGAATCTCTTACAAGGGATTGTGGCTTTTCGTCATCACATTCCTGATTCTGATCTCAAGAAGAATCTTCTCTCCAGCTTGAAAAGCCAGAGAGCCAAAGAAACTGTAAGCTTCAATTCTTATGCGTTTTATGCTTATGATTCTGTTTGGTTAGCAGCTCGTGCTCTTGATGCTTATCTCAATGAAGGTGGAAACATTTCTTTCTCTAGTGACCCTAAGTTGCAAGACACAAATGGAAGCATGTTGCATTTAGCTTCACTTCGTACGTTTGATGGTGGTCCACAGTTTCTCCAGACAATTTTGGGAATGAACTTCACTGGTGTGAGTGGTGAAATTGAGTTTGACATGGAGAAGAATTTAGTTGATCCAGCATATGAAATTCTCAATATTGGTGGTGGTGGATCCCGTAGAATTGGTTATTGGTCTAATCATTCTGGCCTGTCAGTTATAGCTCCTGAAACTTTATATCTGAAAAATTCATCAAACACATCTTTGCTGAGAAATCAACAACTTTACAGTGTGATATGGCCTGGAGAGATTACAACTACACCAAGAGGGTGGGTGTTTCCCAACAATGGACAACCACTTAGGATAGCAGTTCCTAATAGAGTGAGCTACAAGGACTTTGTTTCTAAGGACAAGAACCCTCCAGGGGTACAAGGCTATTGCATTGACGTTTTTGAAGCAGCCTTGAAATTGTTGCCTTACCCCGTTCCACGAAAATACATGTTATTTGGAAATGGTGTAAGGAATCCTAGCTACAACGAGCTTGTGGAACAAGTTGCACAAAATAACTTTGATGCAGTAGTTGGAGATGTGACAATTGTGACAAATAGGACAAGGATTGTGGATTTTACTCAACCTTTCATGCCATCAGGGCTTGTTGTTGTTGTTCCTTTTAAGGAGCAGAAATCAAGCCCTTGGTCTTTCCTTCAGCCATTCACTACTCAAATGTGGTGTGTCACCGGTGCTTTCTTTCTTTTTGTTGGAAGTGTTGTATGGATTCTTGAGCACAGGCTCAATCCTGAGTTCCGGGGCTCACCGAGGAAACAACTTATAACAGTGTTTTGGTTTAGTTTCTCAACAATGTTCTTCTCACACAGGGAGAACACTGTGAGTGGACTTGGACGATTGGTGCTAATCATATGGCTCTTTGTGGTGTTGATCATAAATTCAAGCTACACAGCTAGCTTGACCTCTATCCTCACTGTGCGGCAACTGTCATCTCAAATTGAAGGAATTGATAGCTTGATCTCAAGTACACAACCGATTGGAATTCAAGATGGTTCATTTGCACGCAAGTATCTTGTAGATGACCTCAACATAGCTGAATCAAGAATAGTTACATTGAAAAACATGGAGGATTATATTGATGCCCTTCAGCGTGGCCCTGAGGCTGGAGGGGTTGTGGCAGTTGTTGACGAGCTTCCCTACATTGAGTTCTTGATGTCCAGCACTCAGTGTAAGTTCAGAACTGTTGGCCAGGAGTTCACTAAAAGTGGCTGGGGATTTGCATTCCAGAGGGACTCTCCTCTTGCTGTTGACCTCTCAACTGCCATTCTTCAACTCTCAGAGAGTGGTGACCTGCAAAGGATTCATGACAAATGGCTTAACAAAAAGGAGTGTACAACCGTGGATGTTGATTCAAACAAACTAGCTCTGACAAGCTTCTGGGGCCTCTTTCTTATATGTGGCATTGCATGTTTCATTACCCTGACAATTTTCTTTGCCAGAATCTTCTGCCAATATAACAAATTCATCCCAGAATCTGAGAAAATTGATGAGGAAATCCAGCCAGTGAGAAGATCTAGACGTCCAAGCAGAACTCCTAGCCTCAAGAAATGGATGGTGTTTGTAGATAAAAGGGAATCAGAAGTCAAAGAGATTCTTAGGGATAACAAGAAACGAAGACACAGCCAAAGCTTGGAGGATCCTTCTGTTTCATCAGCCATCTAG 2595 0.4197 MLILARAFSLALTCKSFCTAQIAVRFLEQWKLMENDVVAVVGPLSSGIAHIISHVVNELHVPLLSFGATDPTLSSLQYPYFIRTTQNDYFQMYAVSAFINYHRWREVIAIYVDDDNGRNGVSVLGDALSKKRSKISYKAAFSPGASESDISDLLNEVNLMESRVYVLHVNPDTGLAIFSIAKKLGMMGSGYVWIATDWLHSVLDSSELPDPDTMNLLQGIVAFRHHIPDSDLKKNLLSSLKSQRAKETVSFNSYAFYAYDSVWLAARALDAYLNEGGNISFSSDPKLQDTNGSMLHLASLRTFDGGPQFLQTILGMNFTGVSGEIEFDMEKNLVDPAYEILNIGGGGSRRIGYWSNHSGLSVIAPETLYLKNSSNTSLLRNQQLYSVIWPGEITTTPRGWVFPNNGQPLRIAVPNRVSYKDFVSKDKNPPGVQGYCIDVFEAALKLLPYPVPRKYMLFGNGVRNPSYNELVEQVAQNNFDAVVGDVTIVTNRTRIVDFTQPFMPSGLVVVVPFKEQKSSPWSFLQPFTTQMWCVTGAFFLFVGSVVWILEHRLNPEFRGSPRKQLITVFWFSFSTMFFSHRENTVSGLGRLVLIIWLFVVLIINSSYTASLTSILTVRQLSSQIEGIDSLISSTQPIGIQDGSFARKYLVDDLNIAESRIVTLKNMEDYIDALQRGPEAGGVVAVVDELPYIEFLMSSTQCKFRTVGQEFTKSGWGFAFQRDSPLAVDLSTAILQLSESGDLQRIHDKWLNKKECTTVDVDSNKLALTSFWGLFLICGIACFITLTIFFARIFCQYNKFIPESEKIDEEIQPVRRSRRPSRTPSLKKWMVFVDKRESEVKEILRDNKKRRHSQSLEDPSVSSAI 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01574 864 PIRSF IGluLR_plant 9 863 IPR017103 -
Viun11g01574 864 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 33 820 IPR015683 -
Viun11g01574 864 Gene3D - 87 360 - -
Viun11g01574 864 FunFam Glutamate receptor 87 253 - -
Viun11g01574 864 PRINTS Metabotropic glutamate GPCR signature 72 91 IPR000337 GO:0004930|GO:0007186|GO:0016020
Viun11g01574 864 PRINTS Metabotropic glutamate GPCR signature 91 107 IPR000337 GO:0004930|GO:0007186|GO:0016020
Viun11g01574 864 PRINTS Metabotropic glutamate GPCR signature 107 124 IPR000337 GO:0004930|GO:0007186|GO:0016020
Viun11g01574 864 PRINTS Metabotropic glutamate GPCR signature 40 66 IPR000337 GO:0004930|GO:0007186|GO:0016020
Viun11g01574 864 SMART GluR_14 410 752 IPR001320 GO:0015276|GO:0016020
Viun11g01574 864 SUPERFAMILY Periplasmic binding protein-like II 384 752 - -
Viun11g01574 864 FunFam Glutamate receptor 646 754 - -
Viun11g01574 864 Pfam Bacterial extracellular solute-binding proteins, family 3 419 751 IPR001638 -
Viun11g01574 864 Gene3D - 520 640 - -
Viun11g01574 864 Pfam Receptor family ligand binding region 22 343 IPR001828 -
Viun11g01574 864 Gene3D - 641 754 - -
Viun11g01574 864 Gene3D - 403 519 - -
Viun11g01574 864 MobiDBLite consensus disorder prediction 843 864 - -
Viun11g01574 864 FunFam Glutamate receptor 404 520 - -
Viun11g01574 864 SUPERFAMILY Periplasmic binding protein-like I 20 401 IPR028082 -
Viun11g01574 864 Pfam Ligand-gated ion channel 752 781 IPR001320 GO:0015276|GO:0016020
Viun11g01574 864 CDD GluR_Plant 407 750 - -
Viun11g01574 864 Gene3D - 31 335 - -
Viun11g01574 864 FunFam Glutamate receptor 520 650 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01574 Viun-Chr11 32108584 32113193 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01574 31 717 Ion Channels AT1G05200 69.578 0.0 1023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01574 K05387 - gmx:100802782 1447.57