Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01572 ATGGTTACGGGAAGATCACTGTTCCTCTTGGTTTTGTGCTTGTGGATTCCCTTAGAAATTGTGGGGAGGAAAGAACCTTCTTCACCTACCAGTGTGGATTCCTCTGTTTCTTCAAGACCGAAGGTTGTGAAATTCGGAGCCCTCTTTCCTGCGGATTCTGTCATTGGAAGATCTGCTTTACCTGCAATTTTGGCTGCTGTTAAAGATGTTAATTCTAGCACGAGCATTCTCCCTGGCATTGACCTGCAAGTCATTTTGCACAGCACAAATTGCAGTGCGTTTCTTGGAACAATGGAAGCTCTGCAGTTGATGGAGAATGATGTGGTTGCTGTTGTTGGTCCACTGTCATCTGGAATAGCTCATATAATCTCTCATGTTGTTAATGAACTCCATGTACCTCTTCTGTCGTTTGGGGCTACTGACCCCACTCTATCTTCTCTACAGTACCCTTATTTCATTCGCACTACTCAGAATGATTATTTTCAGATGTATGCAGTTTCAGCCTTTATTAATTATCACAGATGGAGGGAGGTAATTGCAATCTATGTAGATGATGACAATGGCAGGAATGGAGTTTCTGTATTGGGTGATGCACTGTCAAAGAAACGTTCCAAGATCTCTTACAAGGCTGCGTTTTCACCTGGGGCATCAGAAAGTGATATCAGTGACTTGTTGAATGAAGTGAACTTGATGGAATCACGGGTCTATGTTCTGCATGTGAATCCTGATACTGGTTTAGCAATTTTCTCTATTGCCAAGAAGCTTGGAATGATGGGAAGTGGCTATGTTTGGATTGCAACAGATTGGCTTCATTCAGTGCTGGATTCTTCAGAGTTACCTGATCCTGACACAATGAATCTCTTACAAGGGATTGTGGCTTTTCGTCATCACATTCCTGATTCTGATCTCAAGAAGAATCTTCTCTCCAGCTTGAAAAGCCAGAGAGCCAAAGAAACTGTAAGCTTCAATTCTTATGCGTTTTATGCTTATGATTCTGTTTGGTTAGCAGCTCGTGCTCTTGATGCTTATCTCAATGAAGGTGGAAACATTTCTTTCTCTAGTGACCCTAAGTTGCAAGACACAAATGGAAGCATGTTGCATTTAGCTTCACTTCGTACGTTTGATGGTGGTCCACAGTTTCTCCAGACAATTTTGGGAATGAACTTCACTGGTGTGAGTGGTGAAATTGAGTTTGACATGGAGAAGAATTTAGTTGATCCAGCATATGAAATTCTCAATATTGGTGGTGGTGGATCCCGTAGAATTGGTTATTGGTCTAATCATTCTGGCCTGTCAGTTATAGCTCCTGAAACTTTATATCTGAAAAATTCATCAAACACATCTTTGCTGAGAAATCAACAACTTTACAGTGTGATATGGCCTGGAGAGATTACAACTACACCAAGAGGGTGGGTGTTTCCCAACAATGGACAACCACTTAGGATAGCAGTTCCTAATAGAGTGAGCTACAAGGACTTTGTTTCTAAGGACAAGAACCCTCCAGGGGTACAAGGCTATTGCATTGACGTTTTTGAAGCAGCCTTGAAATTGTTGCCTTACCCCGTTCCACGAAAATACATGTTATTTGGAAATGGTGTAAGGAATCCTAGCTACAACGAGCTTGTGGAACAAGTTGCACAAAATAACTTTGATGCAGTAGTTGGAGATGTGACAATTGTGACAAATAGGACAAGGATTGTGGATTTTACTCAACCTTTCATGCCATCAGGGCTTGTTGTTGTTGTTCCTTTTAAGGAGCAGAAATCAAGCCCTTGGTCTTTCCTTCAGCCATTCACTACTCAAATGTGGTGTGTCACCGGTGCTTTCTTTCTTTTTGTTGGAAGTGTTGTATGGATTCTTGAGCACAGGCTCAATCCTGAGTTCCGGGGCTCACCGAGGAAACAACTTATAACAGTGTTTTGGTTTAGTTTCTCAACAATGTTCTTCTCACACAGGGAGAACACTGTGAGTGGACTTGGACGATTGGTGCTAATCATATGGCTCTTTGTGGTGTTGATCATAAATTCAAGCTACACAGCTAGCTTGACCTCTATCCTCACTGTGCGGCAACTGTCATCTCAAATTGAAGGAATTGATAGCTTGATCTCAAGTACACAACCGATTGGAATTCAAGATGGTTCATTTGCACGCAAGTATCTTGTAGATGACCTCAACATAGCTGAATCAAGAATAGTTACATTGAAAAACATGGAGGATTATATTGATGCCCTTCAGCGTGGCCCTGAGGCTGGAGGGGTTGTGGCAGTTGTTGACGAGCTTCCCTACATTGAGTTCTTGATGTCCAGCACTCAGTGTAAGTTCAGAACTGTTGGCCAGGAGTTCACTAAAAGTGGCTGGGGATTTGCATTCCAGAGGGACTCTCCTCTTGCTGTTGACCTCTCAACTGCCATTCTTCAACTCTCAGAGAGTGGTGACCTGCAAAGGATTCATGACAAATGGCTTAACAAAAAGGAGTGTACAACCGTGGATGTTGATTCAAACAAACTAGCTCTGACAAGCTTCTGGGGCCTCTTTCTTATATGTGGCATTGCATGTTTCATTACCCTGACAATTTTCTTTGCCAGAATCTTCTGCCAATATAACAAATTCATCCCAGAATCTGAGAAAATTGATGAGGAAATCCAGCCAGTGAGAAGATCTAGACGTCCAAGCAGAACTCCTAGCCTCAAGAAATGGATGGTGTTTGTAGATAAAAGGGAATCAGAAGTCAAAGAGATTCTTAGGGATAACAAGAAACGAAGACACAGCCAAAGCTTGGAGGATCCTTCTGTTTCATCAGCCATCTAG 2808 0.4227 MVTGRSLFLLVLCLWIPLEIVGRKEPSSPTSVDSSVSSRPKVVKFGALFPADSVIGRSALPAILAAVKDVNSSTSILPGIDLQVILHSTNCSAFLGTMEALQLMENDVVAVVGPLSSGIAHIISHVVNELHVPLLSFGATDPTLSSLQYPYFIRTTQNDYFQMYAVSAFINYHRWREVIAIYVDDDNGRNGVSVLGDALSKKRSKISYKAAFSPGASESDISDLLNEVNLMESRVYVLHVNPDTGLAIFSIAKKLGMMGSGYVWIATDWLHSVLDSSELPDPDTMNLLQGIVAFRHHIPDSDLKKNLLSSLKSQRAKETVSFNSYAFYAYDSVWLAARALDAYLNEGGNISFSSDPKLQDTNGSMLHLASLRTFDGGPQFLQTILGMNFTGVSGEIEFDMEKNLVDPAYEILNIGGGGSRRIGYWSNHSGLSVIAPETLYLKNSSNTSLLRNQQLYSVIWPGEITTTPRGWVFPNNGQPLRIAVPNRVSYKDFVSKDKNPPGVQGYCIDVFEAALKLLPYPVPRKYMLFGNGVRNPSYNELVEQVAQNNFDAVVGDVTIVTNRTRIVDFTQPFMPSGLVVVVPFKEQKSSPWSFLQPFTTQMWCVTGAFFLFVGSVVWILEHRLNPEFRGSPRKQLITVFWFSFSTMFFSHRENTVSGLGRLVLIIWLFVVLIINSSYTASLTSILTVRQLSSQIEGIDSLISSTQPIGIQDGSFARKYLVDDLNIAESRIVTLKNMEDYIDALQRGPEAGGVVAVVDELPYIEFLMSSTQCKFRTVGQEFTKSGWGFAFQRDSPLAVDLSTAILQLSESGDLQRIHDKWLNKKECTTVDVDSNKLALTSFWGLFLICGIACFITLTIFFARIFCQYNKFIPESEKIDEEIQPVRRSRRPSRTPSLKKWMVFVDKRESEVKEILRDNKKRRHSQSLEDPSVSSAI 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01572 935 Gene3D - 474 590 - -
Viun11g01572 935 FunFam Glutamate receptor 717 825 - -
Viun11g01572 935 MobiDBLite consensus disorder prediction 914 935 - -
Viun11g01572 935 Gene3D - 62 406 - -
Viun11g01572 935 Gene3D - 158 431 - -
Viun11g01572 935 FunFam Glutamate receptor 475 591 - -
Viun11g01572 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 329 341 - -
Viun11g01572 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 56 72 - -
Viun11g01572 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 116 144 - -
Viun11g01572 935 SUPERFAMILY Periplasmic binding protein-like I 38 472 IPR028082 -
Viun11g01572 935 Pfam Bacterial extracellular solute-binding proteins, family 3 490 822 IPR001638 -
Viun11g01572 935 FunFam Glutamate receptor 158 324 - -
Viun11g01572 935 CDD GluR_Plant 478 821 - -
Viun11g01572 935 FunFam Glutamate receptor 591 721 - -
Viun11g01572 935 Gene3D - 712 825 - -
Viun11g01572 935 CDD PBP1_GABAb_receptor_plant 44 433 IPR044440 -
Viun11g01572 935 SUPERFAMILY Periplasmic binding protein-like II 455 823 - -
Viun11g01572 935 Pfam Receptor family ligand binding region 60 414 IPR001828 -
Viun11g01572 935 Pfam Ligand-gated ion channel 823 852 IPR001320 GO:0015276|GO:0016020
Viun11g01572 935 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 44 891 IPR015683 -
Viun11g01572 935 PIRSF IGluLR_plant 2 934 IPR017103 -
Viun11g01572 935 Gene3D - 591 711 - -
Viun11g01572 935 SMART GluR_14 481 823 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01572 Viun-Chr11 32108584 32113574 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01572 39 788 Ion Channels AT1G05200 68.533 0.0 1094
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01572 K05387 - gmx:100802782 1601.65