Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01568 ATGATTCCGGCGAGAAACATGCGCTCGATGATAGCTAGGAAGAACAACAACAACAACCTTGGTGGGTTTGGATCATCTTCAACTTTCACTCTTGCGCAGCCGAACCTGATGGAAGCGTTGGAGATGGGTCAGAACACTTCGGAGAGTGAGGTCCCTCGAATCCGTGAAGATGAGTTCGACAGTGCCACCAAGTCTGGTAGTGAAAACCATGAAGGTGCCTCTGGTGAAGACCAAGACCCTCGTCCCAACAAAAAGAAGCGTTACCACCGCCACACCCAACACCAGATCCAAGAAATGGAAGCATTCTTCAAGGAGTGTCCACACCCAGATGACAAGCAAAGGAAGGAACTTAGCCGGGAATTAGGGTTAGAACCATTGCAGGTTAAGTTTTGGTTTCAGAACAAACGCACCCAGATGAAGACACAGCACGAGCGGCATGAGAATACACAACTTCGAACTGAGAATGAGAAGCTTCGAGCTGATAACATGAGGTATAGGGAAGCTCTTAGCAATGCTTCTTGTCCTAATTGTGGTGGACCAACAGCAATAGGAGAAATGTCATTTGATGAACATCACTTGAGGCTTGAGAATGCAAGGCTAAGAGAAGAGATTGATAGGATTTCAGCAATAGCTGCAAAGTATGTAGGGAAGCCTGTGGTGAATTATTCAAATATTTCTCCTTCTCTCCCTCCTCGTCCTCTAGAACTTGGGGTTGGTGCTGGTTTTGGAGGCCAGCCAGCTATTGGTGTGGACATGTATGGAGCTGGAGATCTTCTGAGGTCAATTAGTGGACCCACTGAAGCTGATAAACCCATCATAATAGAGCTAGCTGTTGCAGCTATGGAGGAGCTCATTGGAATGGCACAAATGGGTGATCCCCTTTGGTTAACTACTCTTGATGCCACTTCTACTATACTCAATGAGGACGAATACATCAGGTCCTTCCCTAGAGGAATTGGTCCAAAACCTACAGGCTTCAAATGTGAAGCTTCTCGAGAAACTGCTGTTGTTATCATGAACCATGTCAGCCTCGTTGAGATTCTCATGGATGTGAACCAATGGTCCACAGTGTTTTCTGGTATAGTCTCGAGAGCCATGACACTGGAAGTGCTATCCACAGGGGTGGCTGGGAACTATAATGGTGCCTTACAAGTGATGACAGCAGAATTGCAACTACCAACCCCTCTTGTGCCAACTCGCGAGAGTTACTTTGTAAGGTATTGTAAGCAACATTCAGATGGAACTTGGGCAGTGGTGGATGTCTCTCTGGACAATTTGCGCCCTAGTCCTTCAGCCAGATGTAGAAGAAGACCTTCTGGTTGCTTAATTCAAGAAATGCCAAATGGCTATTCAAAGGTCACATGGGTTGAGCATGTGGAAGTGGATGACAGAGGTGTTCATAATCTTTACAAACAGCTTGTAAGCTCTGGACATGCATTTGGCGCCAAACGTTGGGTTGCAACCTTAGATAGACAGTGTGAAAGACTTGCCAGTGCTATGGCAACAAATATTCCCACTGTTGATGTTGGAGTGATAACAAATCAAGAGGGGAGAAAGAGTATGATGAAGCTGGCTGAAAGAATGGTGATAAGCTTTTGTGCTGGAGTGAGTGCTTCCACTGCCCACACATGGACAACACTGTCGGGAACAGGTGCCGATGATGTAAGGGTGATGACCCGAAAGAGTGTGGATGATCCTGGAAGACCTCCTGGCATTGTTCTCAGTGCTGCTACTTCTTTTTGGCTTCCAGTTCCACCTAAACGAGTTTTTGACTTTCTCCGTGATGAGAACTCTAGGAATGAGTGGGACATTCTCTCCAATGGTGGAGTTGTGCAAGAAATGGCACACATTGCAAATGGACGAGATACTGGAAACTGTGTGTCTCTACTTCGAGTAAATAGTGCAAATTCAAGCCAGAGTAACATGTTGATACTGCAAGAGAGTTGCACCGATTCAACAGGGTCTTTTGTGATTTATGCTCCAGTGGATATTGTTGCAATGAATGTAGTTCTAAATGGAGGAGACCCAGATTATGTGGCACTTCTTCCATCAGGGTTTGCGATTCTCCCAGATGGAACCATATCTCATGAAACTGGACCTGGTGGATCTCTTTTAACTGTTGCATTTCAAATACTGGTTGATTCGGTTCCAACCGCAAAGCTTTCTCTTGGATCTGTTGCCACTGTCAACAATCTCATTGCATGCACTGTTGAGAGAATCAAAGCATCTTTGTCTGGTGAACCTGCTTGA 2250 0.4573 MIPARNMRSMIARKNNNNNLGGFGSSSTFTLAQPNLMEALEMGQNTSESEVPRIREDEFDSATKSGSENHEGASGEDQDPRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYSNISPSLPPRPLELGVGAGFGGQPAIGVDMYGAGDLLRSISGPTEADKPIIIELAVAAMEELIGMAQMGDPLWLTTLDATSTILNEDEYIRSFPRGIGPKPTGFKCEASRETAVVIMNHVSLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQLPTPLVPTRESYFVRYCKQHSDGTWAVVDVSLDNLRPSPSARCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWVATLDRQCERLASAMATNIPTVDVGVITNQEGRKSMMKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENSRNEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTISHETGPGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSGEPA 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01568 749 SUPERFAMILY Homeodomain-like 74 142 IPR009057 -
Viun11g01568 749 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 83 744 IPR042160 -
Viun11g01568 749 Pfam START domain 276 495 IPR002913 GO:0008289
Viun11g01568 749 Gene3D - 323 492 IPR023393 -
Viun11g01568 749 ProSiteProfiles START domain profile. 266 498 IPR002913 GO:0008289
Viun11g01568 749 Coils Coil 148 168 - -
Viun11g01568 749 Pfam Homeodomain 85 140 IPR001356 GO:0003677
Viun11g01568 749 ProSiteProfiles 'Homeobox' domain profile. 82 142 IPR001356 GO:0003677
Viun11g01568 749 FunFam Homeobox-leucine zipper protein GLABRA 2 275 494 - -
Viun11g01568 749 FunFam Homeobox-leucine zipper protein HDG1 72 158 - -
Viun11g01568 749 CDD START_ArGLABRA2_like 270 494 - -
Viun11g01568 749 SMART HOX_1 83 146 IPR001356 GO:0003677
Viun11g01568 749 SMART START_1 275 495 IPR002913 GO:0008289
Viun11g01568 749 Gene3D - 71 159 - -
Viun11g01568 749 SUPERFAMILY Bet v1-like 266 497 - -
Viun11g01568 749 SUPERFAMILY Bet v1-like 514 741 - -
Viun11g01568 749 CDD homeodomain 85 143 IPR001356 GO:0003677
Viun11g01568 749 MobiDBLite consensus disorder prediction 58 93 - -
Viun11g01568 749 ProSitePatterns 'Homeobox' domain signature. 117 140 IPR017970 GO:0000981|GO:0006355
Viun11g01568 749 MobiDBLite consensus disorder prediction 58 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01568 Viun-Chr11 32083964 32090184 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01568 54 749 Homeobox Transcription Factor Family AT1G05230 81.054 0.0 1170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Viun11g01568 START 3.8e-59 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01568 K09338 - gmx:100782260 1429.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g01568 11 32083964 32090184 Viun11g01568 11 32083964 32090184 ECH
Viun5g03077 5 41882634 41889353 Viun11g01568 11 32083964 32090184 PCT