LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun11g01567	ATGATTCCGGCGAGAAACATGCGCTCGATGATAGCTAGGAAGAACAACAACAACAACCTTGGTGGGTTTGGATCATCTTCAACTTTCACTCTTGCGCAGCCGAACCTGATGGAAGCGTTGGAGATGGGTCAGAACACTTCGGAGAGTGAGGTCCCTCGAATCCGTGAAGATGAGTTCGACAGTGCCACCAAGTCTGGTAGTGAAAACCATGAAGGTGCCTCTGGTGAAGACCAAGACCCTCGTCCCAACAAAAAGAAGCGTTACCACCGCCACACCCAACACCAGATCCAAGAAATGGAAGCATTCTTCAAGGAGTGTCCACACCCAGATGACAAGCAAAGGAAGGAACTTAGCCGGGAATTAGGGTTAGAACCATTGCAGGTTAAGTTTTGGTTTCAGAACAAACGCACCCAGATGAAGACACAGCACGAGCGGCATGAGAATACACAACTTCGAACTGAGAATGAGAAGCTTCGAGCTGATAACATGAGGTATAGGGAAGCTCTTAGCAATGCTTCTTGTCCTAATTGTGGTGGACCAACAGCAATAGGAGAAATGTCATTTGATGAACATCACTTGAGGCTTGAGAATGCAAGGCTAAGAGAAGAGATTGATAGGATTTCAGCAATAGCTGCAAAGTATGTAGGGAAGCCTGTGGTGAATTATTCAAATATTTCTCCTTCTCTCCCTCCTCGTCCTCTAGAACTTGGGGTTGGTGCTGGTTTTGGAGGCCAGCCAGCTATTGGTGTGGACATGTATGGAGCTGGAGATCTTCTGAGGTCAATTAGTGGACCCACTGAAGCTGATAAACCCATCATAATAGAGCTAGCTGTTGCAGCTATGGAGGAGCTCATTGGAATGGCACAAATGGGTGATCCCCTTTGGTTAACTACTCTTGATGCCACTTCTACTATACTCAATGAGGACGAATACATCAGGTCCTTCCCTAGAGGAATTGGTCCAAAACCTACAGGCTTCAAATGTGAAGCTTCTCGAGAAACTGCTGTTGTTATCATGAACCATGTCAGCCTCGTTGAGATTCTCATGGATGTGAACCAATGGTCCACAGTGTTTTCTGGTATAGTCTCGAGAGCCATGACACTGGAAGTGCTATCCACAGGGGTGGCTGGGAACTATAATGGTGCCTTACAAGTGATGACAGCAGAATTGCAACTACCAACCCCTCTTGTGCCAACTCGCGAGAGTTACTTTGTAAGGTATTGTAAGCAACATTCAGATGGAACTTGGGCAGTGGTGGATGTCTCTCTGGACAATTTGCGCCCTAGTCCTTCAGCCAGATGTAGAAGAAGACCTTCTGGTTGCTTAATTCAAGAAATGCCAAATGGCTATTCAAAGGTCACATGGGTTGAGCATGTGGAAGTGGATGACAGAGGTGTTCATAATCTTTACAAACAGCTTGTAAGCTCTGGACATGCATTTGGCGCCAAACGTTGGGTTGCAACCTTAGATAGACAGTGTGAAAGACTTGCCAGTGCTATGGCAACAAATATTCCCACTGTTGATGTTGGAGTGATAACAAATCAAGAGGGGAGAAAGAGTATGATGAAGCTGGCTGAAAGAATGGTGATAAGCTTTTGTGCTGGAGTGAGTGCTTCCACTGCCCACACATGGACAACACTGTCGGGAACAGGTGCCGATGATGTAAGGGTGATGACCCGAAAGAGTGTGGATGATCCTGGAAGACCTCCTGGCATTGTTCTCAGTGCTGCTACTTCTTTTTGGCTTCCAGTTCCACCTAAACGAGTTTTTGACTTTCTCCGTGATGAGAACTCTAGGAATGAGTGGGACATTCTCTCCAATGGTGGAGTTGTGCAAGAAATGGCACACATTGCAAATGGACGAGATACTGGAAACTGTGTGTCTCTACTTCGAGTAAATAGTGCAAATTCAAGCCAGAGTAACATGTTGATACTGCAAGAGAGTTGCACCGATTCAACAGGGTCTTTTGTGATTTATGCTCCAGTGGATATTGTTGCAATGAATGTAGTTCTAAATGGAGGAGACCCAGATTATGTGGCACTTCTTCCATCAGGGTTTGCGATTCTCCCAGATGGAACCATATCTCATGAAACTGGACCTGGTGGATCTCTTTTAACTGTTGCATTTCAAATACTGGTTGATTCGGTTCCAACCGCAAAGCTTTCTCTTGGATCTGTTGCCACTGTCAACAATCTCATTGCATGCACTGTTGAGAGAATCAAAGCATCTTTGTCTGGTGAACCTGCTTGA	2250	0.4573	MIPARNMRSMIARKNNNNNLGGFGSSSTFTLAQPNLMEALEMGQNTSESEVPRIREDEFDSATKSGSENHEGASGEDQDPRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYSNISPSLPPRPLELGVGAGFGGQPAIGVDMYGAGDLLRSISGPTEADKPIIIELAVAAMEELIGMAQMGDPLWLTTLDATSTILNEDEYIRSFPRGIGPKPTGFKCEASRETAVVIMNHVSLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQLPTPLVPTRESYFVRYCKQHSDGTWAVVDVSLDNLRPSPSARCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWVATLDRQCERLASAMATNIPTVDVGVITNQEGRKSMMKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENSRNEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTISHETGPGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSGEPA	749

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun11g01567	749	SUPERFAMILY	Homeodomain-like	74	142	IPR009057	-
	Viun11g01567	749	PANTHER	HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1	83	744	IPR042160	-
	Viun11g01567	749	Pfam	START domain	276	495	IPR002913	GO:0008289
	Viun11g01567	749	Gene3D	-	323	492	IPR023393	-
	Viun11g01567	749	ProSiteProfiles	START domain profile.	266	498	IPR002913	GO:0008289
	Viun11g01567	749	Coils	Coil	148	168	-	-
	Viun11g01567	749	Pfam	Homeodomain	85	140	IPR001356	GO:0003677
	Viun11g01567	749	ProSiteProfiles	'Homeobox' domain profile.	82	142	IPR001356	GO:0003677
	Viun11g01567	749	FunFam	Homeobox-leucine zipper protein GLABRA 2	275	494	-	-
	Viun11g01567	749	FunFam	Homeobox-leucine zipper protein HDG1	72	158	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun11g01567	Viun-Chr11	32083963	32090184	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun11g01567	54	749	Homeobox Transcription Factor Family	AT1G05230	81.054	0.0	1170

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-HD-ZIP	Viun11g01567		START	3.8e-59	CL0209

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun11g01567	K09338		-	gmx:100782260	1429.46

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