Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01555 ATGGTTGAGCGAAAGCAGTTCAAGACCAAGTTATGTGTTCTGTATCAGAGAGGTCGCTGCAATCGCCATAATTGCTCTTTCGCGCATGGGAGTGCCGAGCTTCGACGATTCCCTGGCACGTTTAGTGGTAGGCGAGACTACTTAGGTAATGACTTGAGGGATAAACTTGAAAGAAGGCATTTATCTCCTCGAAGGTACTCACCAGCTCAAGATGCAAGAGGCCGCCAGAGCATCCGGGAATACAGTCCTCCAAGGTCTTTGGAGAATAAAAGTGACAGAAGACATAGGAGAAAACAGGGTATTACTGGTCAAAGTGATACTTCCGGAAATTTGAAAGCCTCAGATAGAGTTCAAGATCAAGCTAAAGAAAGAAAAATGCTTTCCTCTGGTTCTAGGAATACTCTCGAGGAGCAGCTGAAGAAAGTAGATTCAGGTATCAGTGCTCTACAGAACCGAAAATTCCAGCTAGAGGTCTACCTTGATGAGAGTATTCAAGAAGTGGATAGCCTTAATTCTAGAATTCAGGAGCTTGAAGCTCAATTATGCAAAGAGGATGAGGAGTGCAAAAGAATTACTTCAAGAATAAGGAAATTTGTTAGAGTCCACAATCATATGTCACAGTTACAAGATGAATTGAAGAGATCTCAAGTCCGACTTCAACGGTTTGGAGATCAGCTTGTCTCAGACATTTCTAAGATTGGTGCCAATGAAGAAGATTTAAGCATTGATATTGTCAGCAATGGTGAAAATACTGGTCTTCTTCCAATTGTCAAACATAATGTGGAGCATAATGATGCATCATCCCACAGAAAAAGGCTGCATATTGAACGAGAGGCTTTGGAAGATTTAAAACAAGATAGATCAAAAGATGGCCATTCGGTTGAGACCGGTAGAACTAAGAAGCGATCTCGGTGGAATACATCAGATCAATTGAATGACGAGTCTCTCAGGGGCCCAGAAAATGGAACTGAAGTTATTAGAGCTCTAGATCTTGAAGGCAGGCACAAGAGAGGATTGAAGCAACCTAGGATTGAAGTGCCATCAACTAGCATGGCAGCTCATGTGGCTGATGAGGACGTTGATATTGAACTTTACAACGGAAATGATATCAATGAAACTGCAAATACAGAAAATGAGAATGGTGTGGCAAACAAGGTGAAGGCTGCACCACTAATGCTTCCCCCTGCTTTGGTACCTCGTAGCAATTATTCGCAGTACGAGGGTAACGACGAGAATGTTGATGTGGATGGTTGA 1254 0.4258 MVERKQFKTKLCVLYQRGRCNRHNCSFAHGSAELRRFPGTFSGRRDYLGNDLRDKLERRHLSPRRYSPAQDARGRQSIREYSPPRSLENKSDRRHRRKQGITGQSDTSGNLKASDRVQDQAKERKMLSSGSRNTLEEQLKKVDSGISALQNRKFQLEVYLDESIQEVDSLNSRIQELEAQLCKEDEECKRITSRIRKFVRVHNHMSQLQDELKRSQVRLQRFGDQLVSDISKIGANEEDLSIDIVSNGENTGLLPIVKHNVEHNDASSHRKRLHIEREALEDLKQDRSKDGHSVETGRTKKRSRWNTSDQLNDESLRGPENGTEVIRALDLEGRHKRGLKQPRIEVPSTSMAAHVADEDVDIELYNGNDINETANTENENGVANKVKAAPLMLPPALVPRSNYSQYEGNDENVDVDG 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01555 417 Coils Coil 266 286 - -
Viun11g01555 417 Gene3D - 1 36 - -
Viun11g01555 417 MobiDBLite consensus disorder prediction 281 321 - -
Viun11g01555 417 MobiDBLite consensus disorder prediction 116 130 - -
Viun11g01555 417 MobiDBLite consensus disorder prediction 85 101 - -
Viun11g01555 417 Coils Coil 160 180 - -
Viun11g01555 417 ProSiteProfiles Zinc finger C3H1-type profile. 6 32 IPR000571 GO:0046872
Viun11g01555 417 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 40 1 416 IPR045868 GO:0046872
Viun11g01555 417 MobiDBLite consensus disorder prediction 281 308 - -
Viun11g01555 417 Coils Coil 132 152 - -
Viun11g01555 417 MobiDBLite consensus disorder prediction 58 136 - -
Viun11g01555 417 Coils Coil 205 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01555 Viun-Chr11 31873955 31882605 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun11g01555 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01555 - - gmx:100811131 712.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g01555 11 31873955 31882605 Viun11g01555 11 31873955 31882605 ECH