Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01554 ATGGTTGAGCGAAAGCAGTTCAAGACCAAGTTATGTGTTCTGTATCAGAGAGGTCGCTGCAATCGCCATAATTGCTCTTTCGCGCATGGGAGTGCCGAGCTTCGACGATTCCCTGGCACGTTTAGTGGTAGGCGAGACTACTTAGGTAATGACTTGAGGGATAAACTTGAAAGAAGGCATTTATCTCCTCGAAGGTACTCACCAGCTCAAGATGCAAGAGGCCGCCAGAGCATCCGGGAATACAGTCCTCCAAGGTCTTTGGAGAATAAAAGTGACAGAAGACATAGGAGAAAACAGGGTATTACTGGTCAAAGTGATACTTCCGGAAATTTGAAAGCCTCAGATAGAGTTCAAGATCAAGCTAAAGAAAGAAAAATGCTTTCCTCTGGTTCTAGGAATACTCTCGAGGAGCAGCTGAAGAAAGTAGATTCAGGTATCAGTGCTCTACAGAACCGAAAATTCCAGCTAGAGGTCTACCTTGATGAGAGTATTCAAGAAGTGGATAGCCTTAATTCTAGAATTCAGGAGCTTGAAGCTCAATTATGCAAAGAGGATGAGGAGTGCAAAAGAATTACTTCAAGAATAAGGAAATTTGTTAGAGTCCACAATCATATGTCACAGTTACAAGATGAATTGAAGAGATCTCAAGTCCGACTTCAACGGTTTGGAGATCAGCTTGTCTCAGACATTTCTAAGATTGGTGCCAATGAAGAAGATTTAAGCATTGATATTGTCAGCAATGGTGAAAATACTGGTCTTCTTCCAATTGTCAAACATAATGTGGAGCATAATGATGCATCATCCCACAGAAAAAGGCTGCATATTGAACGAGAGGCTTTGGAAGATTTAAAACAAGGTAATAGATCAAAAGATGGCCATTCGGTTGAGACCGGTAGAACTAAGAAGCGATCTCGGTGGAATACATCAGATCAATTGAATGACGAGTCTCTCAGGGGCCCAGAAAATGGAACTGAAGTTATTAGAGCTCTAGATCTTGAAGGCAGGCACAAGAGAGGATTGAAGCAACCTAGGATTGAAGTGCCATCAACTAGCATGGCAGCTCATGTGGCTGATGAGGACGTTGATATTGAACTTTACAACGGAAATGATATCAATGAAACTGCAAATACAGAAAATGAGAATGGTGTGGCAAACAAGGTGAAGGCTGCACCACTAATGCTTCCCCCTGCTTTGGTACCTCGTAGCAATTATTCGCAGTACGAGGGTAACGACGAGAATGTTGATGTGGATGGTTGA 1257 0.4256 MVERKQFKTKLCVLYQRGRCNRHNCSFAHGSAELRRFPGTFSGRRDYLGNDLRDKLERRHLSPRRYSPAQDARGRQSIREYSPPRSLENKSDRRHRRKQGITGQSDTSGNLKASDRVQDQAKERKMLSSGSRNTLEEQLKKVDSGISALQNRKFQLEVYLDESIQEVDSLNSRIQELEAQLCKEDEECKRITSRIRKFVRVHNHMSQLQDELKRSQVRLQRFGDQLVSDISKIGANEEDLSIDIVSNGENTGLLPIVKHNVEHNDASSHRKRLHIEREALEDLKQGNRSKDGHSVETGRTKKRSRWNTSDQLNDESLRGPENGTEVIRALDLEGRHKRGLKQPRIEVPSTSMAAHVADEDVDIELYNGNDINETANTENENGVANKVKAAPLMLPPALVPRSNYSQYEGNDENVDVDG 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01554 418 Gene3D - 1 36 - -
Viun11g01554 418 MobiDBLite consensus disorder prediction 116 130 - -
Viun11g01554 418 MobiDBLite consensus disorder prediction 85 101 - -
Viun11g01554 418 Coils Coil 160 180 - -
Viun11g01554 418 MobiDBLite consensus disorder prediction 281 309 - -
Viun11g01554 418 ProSiteProfiles Zinc finger C3H1-type profile. 6 32 IPR000571 GO:0046872
Viun11g01554 418 Coils Coil 132 152 - -
Viun11g01554 418 MobiDBLite consensus disorder prediction 58 136 - -
Viun11g01554 418 MobiDBLite consensus disorder prediction 281 322 - -
Viun11g01554 418 Coils Coil 205 225 - -
Viun11g01554 418 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 40 1 417 IPR045868 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01554 Viun-Chr11 31873955 31882605 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun11g01554 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01554 - - gmx:100811131 706.057