LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun11g01542	ATGAAGTTGAAAAATATAATGGAATTGACAAGACCCAATTATGCTGTTGTTTATGTCATTCTCCTTTGTGCGTTGGCCCAAGGGGGCTCAGAGGGAAAAGGTGGAAAGGAAGATGGATTTTCTAGAGATGGTGGTGGGGCATCATTCATTTATGTTCATAGATTAAAGGTAGAAAATGAGGGTAAACACTGCAGGAAACAGTTGGTAGACAGGAACATTGACTTGCATCCCCCGGAAGGGAGTGGTGACATAAAGAGTATTAAAAGTAACATAAACAGAGAAACTAGTTCTCTACCACTTTATATAAAAAGAAAAACTTTAGATAGTAAAAGAACTAGTACTAGTCCTGTTTCAGAAAAGGGTAGCTCTAGATATTTGTCAACAGAGCATTCTGGATCAACCTTGGGTGTGGATAGAGGCCATGGAAGAAACTTGCTTGCTGATTCACCAAACAAAAAAACGGCACCAAGTCCTTCTCCTACACCAGCCAGATCTCCATTATCACCAAGTGAAGCTCCAACACCAGCCAGTTCTCCATTATCACCAAGTCGTGCACCAAAACCAGCCACTTCTCCACCACCACCTGCAACTCCCAAAAAAAAAAATGTACCACTCCCTCCAGATAAGTCATTTTCACCTCCAGCCCCTGTAGCTCGTTCTCCTCCCAAAAATTCTAAACCTACAGGAAAGACTCCTCCTTCAAAATCTAGCGGTGATGACAAAAAGAATCAAACAATTATTTTAGCTACTACTTTATCAGGTGTTGTAATATTGATAGGCTTGTTCCTCTGCTATCGTGAGGCCAAAAGAAAGAAAAGGGAAAGCGACGACAGTCCTTTGCTCGTATTAACCTCGGATGATTATACTGGCGGTTCAAGAAAGGTTGTTCAATTAGGAAATTCTAGAAGGGATGAATATGACATTGGCGATGGAAAGAACCCTTCTAATGTTAGAAATTTGCCCAGTAGGAAGGGTATAGATATCAACGTCTCAATGGTTGACATACCATCATCATCATCATCAGAAGGTGTAAAAAAACTAACAGTATCTGCTAGTGTAGAGTCTGCCCCTCCTTCTCCTCCTCCCCCACCTCCTCCTTCTTCTTCTCCTCTTCCTCTTTCTTCTTCTCTTCCTCCTCCTTCTTCTCCTTCTTCTTCCTCCTCTTTTGCTCCTCCTCCTCCTCCTCCTCCTGGCCGTACTGCTGGACCACCACCACCACCTCCTCCGAGACAGCCTCCTAACGCTCCTCGTACACCGCCGCCTCCAAAAGGTGCTCATGCTCCGCCAGCTCCTCCCAAACCAGTTGGAGGTGCGAATCATGGACCACTACTTCCTAAAGATGGAAGTCCAAATGAGGGTGATACTCAAGCTCCAAAACCAAAACTAAAGCCATTTTTTTGGGATAAGGTTAATGCAAAGCCCGGCCAAACAATGGTGTGGCATGAAATCAGTTCAGGATCATTCGTGTTTAATGAGGAAATGATGGAGTCTTTATTTGGCTGCACCAACCAGAACAAGAATGATCGCAGAAGAGATTCATCCTTAGAAAATTCAGTGCAATATATTAAGCTTATTGATCCTAGGAAAGCACAGAACTTATCAATTCTTTTGCGAGCTCTTAATGTCACTACAGAAGAAGTTGTCGATGCTCTTGTAGAAGGCAATGAGATTCCGATTGAGCTGATCCAGACGTTGTTGAAGATGGCACCTACACAAGACGAGGAACTGAAGCTAAGGCTATTCACAGGACAGCTGCATGAACTGGGCCCAGCAGAGAGGTTTCTCAAAGTGTTGGTTGAGATTCCTTTCGCTTTCAAACGCCTTGAATGTCTGATGTTCATGCATAACCTTCAAGAAGATTTCTCAAGCATTAAGGACTCCTTTGCCACATTAGAGGTGGCTTGCGAGGACTTGAGAAAAAGCAGGCTATTCCTGAAGCTCCTAGAAGCAGTTCTGAAAACCGGCAACCGTATGAATGACGGAACCTATCGCGGCGGCGCGCAAGCATTCAGGCTCGACACCCTCCTCAAACTCTCCGACGTCAAGGGAACGGACGGCAAGACCACACTCCTGCACTTCGTCGTGGAGGAGATCATCAGGTCCGAGGGAATCCGCGCGGCGCGCAACGAAAGAGCCAGCCGGAGCATCTCTAGCGTCCACACCAGCGACGAATCCGACGAGGGCGAGGAGTCCGAGGACCGCTACCGCAGAGTGGGCCTCCAGGTGGTGTCGAGCCTGGGTGTGGAACTCGCGGCCGTGAAGAAGGCGGCGCTGATAGACGGCGACGCGCTGACCTCGGGGGTGTCGAAGCTGGGACACTCGTTGGTGAAGACGCAGAATTTTCTTGACACGGACATGAAAAACATCGTGGAAGAGACCGAGTTCCAGGGCAGCATGGAGCGGTTCATGGTAAACGCGAGGCAGGAGGTGCTGTGGATGGTGGAGGAGGAGAAGAGGATAATGGCGCTGGTTAAGAGCACTGCCGACTACTTTCACGGCAATGCCGGGAAGGATGAAGGTTTGCGTTTGTTCCTAATCGTGCGCGATTTCTTGATCATATTGGACAAGGTTTGCAAACAAGTGAAGGACTCGACCATGACGCCGGCGAAGCCTCCCACCATCACTACTACCAAGAAGAAGCCTAAGCCTAAGACTCCTTCTCCTTCTCCTTCGGTTTCTTCCCCTACCGCGCGTAATCAAGATTCGCCGAAGCCATCCTCTAATCTCCACAGTAAGCTCTTCCCTGCCATTGCTGAGAGGAGAATGGACTACTCTAGCTCTGATAGCTCCGATGATGACGACGACTAA	2808	0.4758	MKLKNIMELTRPNYAVVYVILLCALAQGGSEGKGGKEDGFSRDGGGASFIYVHRLKVENEGKHCRKQLVDRNIDLHPPEGSGDIKSIKSNINRETSSLPLYIKRKTLDSKRTSTSPVSEKGSSRYLSTEHSGSTLGVDRGHGRNLLADSPNKKTAPSPSPTPARSPLSPSEAPTPASSPLSPSRAPKPATSPPPPATPKKKNVPLPPDKSFSPPAPVARSPPKNSKPTGKTPPSKSSGDDKKNQTIILATTLSGVVILIGLFLCYREAKRKKRESDDSPLLVLTSDDYTGGSRKVVQLGNSRRDEYDIGDGKNPSNVRNLPSRKGIDINVSMVDIPSSSSSEGVKKLTVSASVESAPPSPPPPPPPSSSPLPLSSSLPPPSSPSSSSSFAPPPPPPPGRTAGPPPPPPPRQPPNAPRTPPPPKGAHAPPAPPKPVGGANHGPLLPKDGSPNEGDTQAPKPKLKPFFWDKVNAKPGQTMVWHEISSGSFVFNEEMMESLFGCTNQNKNDRRRDSSLENSVQYIKLIDPRKAQNLSILLRALNVTTEEVVDALVEGNEIPIELIQTLLKMAPTQDEELKLRLFTGQLHELGPAERFLKVLVEIPFAFKRLECLMFMHNLQEDFSSIKDSFATLEVACEDLRKSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFRLDTLLKLSDVKGTDGKTTLLHFVVEEIIRSEGIRAARNERASRSISSVHTSDESDEGEESEDRYRRVGLQVVSSLGVELAAVKKAALIDGDALTSGVSKLGHSLVKTQNFLDTDMKNIVEETEFQGSMERFMVNARQEVLWMVEEEKRIMALVKSTADYFHGNAGKDEGLRLFLIVRDFLIILDKVCKQVKDSTMTPAKPPTITTTKKKPKPKTPSPSPSVSSPTARNQDSPKPSSNLHSKLFPAIAERRMDYSSSDSSDDDDD	935

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun11g01542	935	MobiDBLite	consensus disorder prediction	332	354	-	-
	Viun11g01542	935	MobiDBLite	consensus disorder prediction	355	438	-	-
	Viun11g01542	935	MobiDBLite	consensus disorder prediction	155	221	-	-
	Viun11g01542	935	SMART	it6_source	452	870	IPR015425	-
	Viun11g01542	935	MobiDBLite	consensus disorder prediction	710	734	-	-
	Viun11g01542	935	MobiDBLite	consensus disorder prediction	866	882	-	-
	Viun11g01542	935	MobiDBLite	consensus disorder prediction	107	242	-	-
	Viun11g01542	935	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	452	880	IPR015425	-
	Viun11g01542	935	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	520	866	-	-
	Viun11g01542	935	PANTHER	FORMIN-RELATED	220	925	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Viun11g01542	935	MobiDBLite	consensus disorder prediction	891	909	-	-
	Viun11g01542	935	MobiDBLite	consensus disorder prediction	863	935	-	-
	Viun11g01542	935	MobiDBLite	consensus disorder prediction	111	134	-	-
	Viun11g01542	935	MobiDBLite	consensus disorder prediction	720	734	-	-
	Viun11g01542	935	Pfam	Formin Homology 2 Domain	454	854	IPR015425	-
	Viun11g01542	935	Gene3D	Formin, FH2 domain	458	880	IPR042201	-
	Viun11g01542	935	MobiDBLite	consensus disorder prediction	269	464	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun11g01542	Viun-Chr11	31662012	31667277	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun11g01542	418	862	FH2 protein (formin) Gene Family	AT5G67470	46.154	3.78e-119	383

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun11g01542	-		-	vum:124822826	849.351