Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01539 ATGTTAGTGAAAAACCAGAATAGAGGGGATGGATCCAAGTCTCTGGCCGATACACTGGCGAGATGGAAAGAGTACAATGCTTGGGTTGAATCTAGCAATGAGGCTGAGAAACCAGTTAGGAAAGTTCCTGCCAAAGGATCAAAGAAAGGGTGTATGAAAGGTAAAGGAGGGCCTGAGAACACACTCTGTAACTACAGAGGAGTTAGGCAAAGAACTTGGGGAAAATGGGTTGCTGAAATCCGGGAGCCAAACAGAGGGAATAGGCTCTGGTTGGGTACTTTTCCCACTGCCATTAGTGCTGCTCTGGCTTATGATGAAGCAGCTAAGGCAATGTATGGTTCTGTTGCACGTCTTAACTTTCCCAACCTTGAAGTTTCAGCTTTATCTCAGGAATCAAAAAGAAATTCCCAAGCTGATAGTCAATGTGGTTCTGCATTGATGATATCAGAGAGTTCTGAATGTATGATATTTCCAAACAGCTCTGAGGGAGACACAGCTAAGGATGATGACAAGGAAGGCCTCTCCTTATCCTTAAGTGTTAAACATGAGGTAGTGTAG 558 0.4409 MLVKNQNRGDGSKSLADTLARWKEYNAWVESSNEAEKPVRKVPAKGSKKGCMKGKGGPENTLCNYRGVRQRTWGKWVAEIREPNRGNRLWLGTFPTAISAALAYDEAAKAMYGSVARLNFPNLEVSALSQESKRNSQADSQCGSALMISESSECMIFPNSSEGDTAKDDDKEGLSLSLSVKHEVV 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01539 185 Gene3D AP2/ERF domain 64 122 IPR036955 GO:0003700|GO:0006355
Viun11g01539 185 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Viun11g01539 185 CDD AP2 63 123 IPR001471 GO:0003700|GO:0006355
Viun11g01539 185 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Viun11g01539 185 SUPERFAMILY DNA-binding domain 64 121 IPR016177 GO:0003677
Viun11g01539 185 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Viun11g01539 185 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Viun11g01539 185 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 146 - -
Viun11g01539 185 FunFam Ethylene-responsive transcription factor 2 63 122 - -
Viun11g01539 185 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01539 Viun-Chr11 31620721 31622442 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01539 2 125 AP2-EREBP Transcription Factor Family AT2G40350 57.031 2.50e-50 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Viun11g01539 AP2 3.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01539 - - gmx:100783729 299.671