Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01530 ATGGTGAGAACCCCGTCTTATGAGAAAAGTGGATTAAGGAAGGGTACTTGGACTCCAGAAGAAGATACGAAGTTGCTTTCTTATGTTACTAGGTATGGATGCTGTAATTGGCGACAACTTCCCAAGTTTGCAGGTCTGGCAAGAAGTGGGAAAAGTTGTAGATCGAGATGGATGAATTATCTAAGGCCTAATCTCAAAAGAGGGAACTTCACTCCAAAAGAAGAAGAATGCATCATCAGAATGCACAAGAAACTTGGTAACAGGTGGTCGGCTATTGCGGCTGAGTTACTAGGAAGAGCAGATTCGGAAGTAAAAAACCATTGGCACGCCAGTCTCAAGAAAAGGTCTCGAGAAGAAACACTGGCGAAAGAAGAAAGTAGTGTCCCCAAATCATCAAAGAATAAAGAATCCATGGACTTGGTTCTCAACTGTAATGGTTTTCCTGCTACTTCCCGGATTACAAATACTTCATCATCCTTATTCTCATTCTCGTCACTGTCATCCTCCAGCAAGGAGTTTTCCTCAGGGCCATGTTTCTCTTAA 543 0.4254 MVRTPSYEKSGLRKGTWTPEEDTKLLSYVTRYGCCNWRQLPKFAGLARSGKSCRSRWMNYLRPNLKRGNFTPKEEECIIRMHKKLGNRWSAIAAELLGRADSEVKNHWHASLKKRSREETLAKEESSVPKSSKNKESMDLVLNCNGFPATSRITNTSSSLFSFSSLSSSSKEFSSGPCFS 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01530 180 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Viun11g01530 180 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Viun11g01530 180 MobiDBLite consensus disorder prediction 115 132 - -
Viun11g01530 180 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Viun11g01530 180 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Viun11g01530 180 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 155 - -
Viun11g01530 180 CDD SANT 16 61 IPR001005 -
Viun11g01530 180 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Viun11g01530 180 Gene3D - 14 66 - -
Viun11g01530 180 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Viun11g01530 180 FunFam MYB-related transcription factor 13 66 - -
Viun11g01530 180 Gene3D - 68 141 - -
Viun11g01530 180 SMART sant 13 63 IPR001005 -
Viun11g01530 180 SMART sant 66 114 IPR001005 -
Viun11g01530 180 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Viun11g01530 180 MobiDBLite consensus disorder prediction 115 134 - -
Viun11g01530 180 CDD SANT 69 109 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01530 Viun-Chr11 31521495 31522653 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01530 1 115 MYB Transcription Factor Family AT2G31180 64.348 5.43e-53 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun11g01530 Myb_DNA-binding 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01530 K09422 - gmx:100777107 235.343