Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01528 ATGAAGAAGTGCGAACTGTGTAAGCTTCCGGCAAGGATTTTCTGCGAGTCAGACCAGGCCAGCTTATGCTGGGACTGCGACGCAAAGGTTCACGGCGCAAACTTCTTGGTCGCCAGACACTCGCGAACCCTCCTCTGCCGCACGTGCCACTCTCCCACGCCGTGGAAGGCCGCCGGAGCCAGACTCGCTAACGCCGCCTCCATCTGCCACCGCTGCGCCGCCTCGGCCGCGGAAGAACCAGACGAGACCGAATCCGGCAATGACGAGGAACCAGACACCGAGGACGACGAGGTCTCCGGCGAGGAAGACGGCGAGAACCAGGTGGTGCCGTGGTCCTCCACACCGCCTCCGCCGGCGAGCTCCTCCAGCAGCGAGTGCTCGTCCTTCAGCGGGTGCAAAAACGAGGACGACGAAGGTGCTTCTGTTTCCGTATGTGAACCGGAAACGACAACATCCTCGTTGAAACGACAACGCGAGAACAACAACGACGACGAAGACGGCGTATCCGGCCGTGATCCGCAGCGGTTTGGAAGGGTTGCGCATCTCAACGGAGGTGGCGTGTGA 564 0.617 MKKCELCKLPARIFCESDQASLCWDCDAKVHGANFLVARHSRTLLCRTCHSPTPWKAAGARLANAASICHRCAASAAEEPDETESGNDEEPDTEDDEVSGEEDGENQVVPWSSTPPPPASSSSSECSSFSGCKNEDDEGASVSVCEPETTTSSLKRQRENNNDDEDGVSGRDPQRFGRVAHLNGGGV 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01528 187 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 155 - -
Viun11g01528 187 CDD Bbox1_BBX-like 3 45 - -
Viun11g01528 187 Pfam B-box zinc finger 2 40 IPR000315 GO:0008270
Viun11g01528 187 MobiDBLite consensus disorder prediction 76 187 - -
Viun11g01528 187 SMART bboxneu5 1 45 IPR000315 GO:0008270
Viun11g01528 187 MobiDBLite consensus disorder prediction 157 172 - -
Viun11g01528 187 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Viun11g01528 187 MobiDBLite consensus disorder prediction 81 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01528 Viun-Chr11 31508376 31509552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01528 2 104 C2C2-CO-like Transcription Factor Family AT5G54470 55.340 4.12e-32 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Viun11g01528 zf-B_box 9.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01528 - - vun:114168631 352.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g01528 11 31508376 31509552 Viun11g01528 11 31508376 31509552 ECH
Viun5g03028 5 41426717 41428090 Viun11g01528 11 31508376 31509552 PCT