Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01521 ATGGTGAGAACCCCTTACTGTGACAAAAGTGGACTGAGAAAAGGAACATGGACACCAGAAGAAGATTGGAAGTTGATTGCTTATGTCACTACACATGGCCACAAGAATTGGCGCCAATTGCCTAAGTTGGCAGGTCTTGCTAGGTGTGGAAAGAGCTGCAGATTGAGGTGGATGAATTACTTAAGGCCAGACATCAAAAGAGGGAACTACACTTATGAAGAAGAAGAGATAATTATCAATCTGCACCAAATTCATGGAAATAGGTGGTCAGTGATTGCCTCCCACTTACCTGGAAGATCAGATAACGAGATAAAAAATCACTGGCATGCACATCTTAAGAAGCGCTTTCAACACAATTCAGAAACAAATGAAAAAGTTGAAGCTTCCACATCAAAACAGCATTCCCTACTTGAATCCATTCAAGAGGAATCTGGGGAAGTTGTTGCAAGCAGTTTCCAGAACAGTGATTCTCCGTCGCCTCAGCACACATCATTGATTGATGCTTTGTGCATGATATCTGAACCTGAACCAGCCAGTAACGGGAATTTGGCTACTCATAACTTTGCTGATTTTATGGGGGAAAACACAGATCCTATAAGTGCTTATTCTTGGGAAGAACTTTATGAAATCTCATACTTATGTGAATTTCTCGCTCCTTTGTACTGA 666 0.4129 MVRTPYCDKSGLRKGTWTPEEDWKLIAYVTTHGHKNWRQLPKLAGLARCGKSCRLRWMNYLRPDIKRGNYTYEEEEIIINLHQIHGNRWSVIASHLPGRSDNEIKNHWHAHLKKRFQHNSETNEKVEASTSKQHSLLESIQEESGEVVASSFQNSDSPSPQHTSLIDALCMISEPEPASNGNLATHNFADFMGENTDPISAYSWEELYEISYLCEFLAPLY 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01521 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Viun11g01521 221 CDD SANT 69 112 IPR001005 -
Viun11g01521 221 CDD SANT 16 61 IPR001005 -
Viun11g01521 221 Gene3D - 69 139 - -
Viun11g01521 221 FunFam MYB-related transcription factor 13 66 - -
Viun11g01521 221 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Viun11g01521 221 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Viun11g01521 221 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Viun11g01521 221 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Viun11g01521 221 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 159 - -
Viun11g01521 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Viun11g01521 221 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Viun11g01521 221 Gene3D - 14 66 - -
Viun11g01521 221 SMART sant 13 63 IPR001005 -
Viun11g01521 221 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01521 Viun-Chr11 31419755 31421044 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01521 1 125 MYB Transcription Factor Family AT1G06180 68.000 1.31e-60 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun11g01521 Myb_DNA-binding 2.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01521 K09422 - gmx:106799185 307.375