Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01519 ATGGTGAGAACCCCGTCTTGTGACAAAAGTGGGTTAAGGAAAGGTACTTGGACTCCGGAAGAAGATATGAAGTTGGTTGCTTATGTTACTAGGTATGGATGCTGGAATTGGCGACAACTTCCCAAGTTTGCAGGTCTTGCAAGGTGTGGGAAAAGTTGCAGATTGAGATGGATGAACTATCTAAGGCCTAATCTCAAAAGAGGGAACTTCACCCCACAAGAAGAAGAATGCATCATCAGAATGCTCAAAAAACTTGGTAACAGATGGTCGGCTATTGCGGCTGAGTTACCAGGAAGAACAGATAACGAAATAAAAAACCACTGGCACACCACTCTCAAGAAAAGGTGTCAACAAAGTACAGTGACAAATGAAGAAGCCAGAGCCTCCAAATCGAAGAATAAAGAATCCAGGGCAGGGACAAACTCGGTTCCGAACAAAAATGGTGTTACTGTTAGTGTTCCAGCCACTTCCCAGATTTCAGATAACTCATCAGACTCATTCTCGCCGGTTTCATCCTCCAGCAGCGAGTTTTCTTCCATAACTTCAGATCGTTCTAGCATGGGAAATTTGGTGTTTGAAGATGATTTCGGTTTTCTTGATTCGTATGTGAATGAAAGTTTCTGGAAAGAACTGAATCTTGATGGAGATACTAGTTGTACAGAGATGGTTGATTCTTGTGCATTATCTCCGAATCAATCATCGAGTGAAAGTGTGGTTGTGGAGAATGACTTTGGCAGCTTTCTGGATGCATATGGTGAGGTAACATTCGATAACTTTTGGTCGGAACCATATGTGGCTGACGTGTCCCACGTTCCTAGCGAGCTACTTGTTCCCTCCGTGGTAGAATCTGAATATTTTACACCTATGTACGATGATCTGTGGGGTCAAAGTCATTTTGTACAATGA 906 0.4283 MVRTPSCDKSGLRKGTWTPEEDMKLVAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWMNYLRPNLKRGNFTPQEEECIIRMLKKLGNRWSAIAAELPGRTDNEIKNHWHTTLKKRCQQSTVTNEEARASKSKNKESRAGTNSVPNKNGVTVSVPATSQISDNSSDSFSPVSSSSSEFSSITSDRSSMGNLVFEDDFGFLDSYVNESFWKELNLDGDTSCTEMVDSCALSPNQSSSESVVVENDFGSFLDAYGEVTFDNFWSEPYVADVSHVPSELLVPSVVESEYFTPMYDDLWGQSHFVQ 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01519 301 SMART sant 13 63 IPR001005 -
Viun11g01519 301 SMART sant 66 114 IPR001005 -
Viun11g01519 301 CDD SANT 69 112 IPR001005 -
Viun11g01519 301 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Viun11g01519 301 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Viun11g01519 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Viun11g01519 301 CDD SANT 16 61 IPR001005 -
Viun11g01519 301 Gene3D - 14 66 - -
Viun11g01519 301 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Viun11g01519 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Viun11g01519 301 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Viun11g01519 301 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 216 - -
Viun11g01519 301 Gene3D - 68 142 - -
Viun11g01519 301 MobiDBLite consensus disorder prediction 114 151 - -
Viun11g01519 301 FunFam Transcription factor MYB14 69 143 - -
Viun11g01519 301 FunFam MYB-related transcription factor 13 66 - -
Viun11g01519 301 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Viun11g01519 301 MobiDBLite consensus disorder prediction 135 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01519 Viun-Chr11 31371779 31373143 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01519 1 211 MYB Transcription Factor Family AT2G31180 45.498 3.16e-58 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun11g01519 Myb_DNA-binding 1.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01519 K09422 - gmx:778184 411.764