Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01518 ATGGTAAGAACCCCATCTTGTGACAAAAGTGGACTCAGGAAGGGTACTTGGACTCCCGAGGAAGATAGAAAATTAATTGCATATGTTACTAGATATGGTTCCTGGAATTGGCGCCAACTTCCCAGGTTTGCAGGTCTGGCAAGATGTGGGAAAAGTTGTAGATTGAGATGGATGAATTATCTGAGGCCTAACGTCAAAAGAGGGAACTTCACTCCACAAGAAGAAGAATGCATCATCAGAATGCACAAGAAACTTGGTAACAGGTGGTCGGCTATTGCGGCTGAGTTACCAGGAAGAACAGATAACGAAATAAAAAACCATTGGCACACTACTCTCAAGAAAAGGTCTGAACAAAACACACACACAAATGAAGAAGCTAGAGCCTTCAAATCAAAGAACAAAGAATCCAACCAAAGTGGTGTTACTGTTACTCTTCCATCCAATTCCCAGGCTTCTGATAATGCATCAGCCTCGGTCTCACCACTGTCATCTTCAAGCGGCGTGTTTTCCTCCACAGCTTCAGATGATTGCAGTGCTGCCAGCATGAAAAGTTTGGTTTTTGAAGATGGTGACTTTGGTTTTCTGGATTCGTACATGGAGCCGATGAATGAGAGTTTCTGGAGCGAGCTAAATCTTGATGACATCTCCCACAGTGCAGCATGTGAAATAGTGTCAGGAGATACTACTAGTGGCGCGATTCAAAGCACGGATGATACTAGCGTTCATGATTCTTGTGCAATGTCTCCGCATGGATCGAGCAGCGAAAGTGTTGTTGTCGATAATGGGTCTGGCAGTTTTCTCGATGCATATGCAGAGGCAACGGTTGAGAATTTTTGGATGCAGCCATATGTGGCTGACATGTCCCACGTTCCGAGCGAACTTCTTGTCCCCTCCGAGGTAGAATCTGAATATTTTACTCCGATCTACGATGATCTGTGGGGACAAAGTCATTTCTATTAG 960 0.4448 MVRTPSCDKSGLRKGTWTPEEDRKLIAYVTRYGSWNWRQLPRFAGLARCGKSCRLRWMNYLRPNVKRGNFTPQEEECIIRMHKKLGNRWSAIAAELPGRTDNEIKNHWHTTLKKRSEQNTHTNEEARAFKSKNKESNQSGVTVTLPSNSQASDNASASVSPLSSSSGVFSSTASDDCSAASMKSLVFEDGDFGFLDSYMEPMNESFWSELNLDDISHSAACEIVSGDTTSGAIQSTDDTSVHDSCAMSPHGSSSESVVVDNGSGSFLDAYAEATVENFWMQPYVADMSHVPSELLVPSEVESEYFTPIYDDLWGQSHFY 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01518 319 CDD SANT 69 112 IPR001005 -
Viun11g01518 319 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Viun11g01518 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Viun11g01518 319 CDD SANT 16 61 IPR001005 -
Viun11g01518 319 Gene3D - 68 142 - -
Viun11g01518 319 SMART sant 13 63 IPR001005 -
Viun11g01518 319 SMART sant 66 114 IPR001005 -
Viun11g01518 319 FunFam MYB-related transcription factor 13 66 - -
Viun11g01518 319 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Viun11g01518 319 MobiDBLite consensus disorder prediction 111 165 - -
Viun11g01518 319 MobiDBLite consensus disorder prediction 111 132 - -
Viun11g01518 319 FunFam Transcription factor MYB14 69 142 - -
Viun11g01518 319 MobiDBLite consensus disorder prediction 236 257 - -
Viun11g01518 319 Gene3D - 6 67 - -
Viun11g01518 319 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 215 - -
Viun11g01518 319 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Viun11g01518 319 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Viun11g01518 319 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Viun11g01518 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Viun11g01518 319 MobiDBLite consensus disorder prediction 133 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01518 Viun-Chr11 31358072 31359456 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01518 1 189 MYB Transcription Factor Family AT2G31180 50.262 7.91e-62 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun11g01518 Myb_DNA-binding 1.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01518 K09422 - gmx:778184 441.039