Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01517 ATGGTAAGAACTCCTTTCTATGACAAAAATGGAATGAAGAAAGGTGCATGGAGCAAAGAAGAAGATGATAAATTAAGAGCTTATGTTCACAGATATGGTCACTCTAATTGGCGTCAACTCCCCAAGTTTGCAGGTTTAGCAAGGTGTGGGAAAAGTTGCAGACTTCGATGGTTGAATTACTTGAGACCAAATCTAAAACACGGGAACTACACCCGAGAGGAAGAAGAAATAATCATCAGATTACACCAACAATTTGGAAATAGATGGTCCTTGATTGCTGAAAAACTTCCTGGAAGAACAGACAACGAGGTAAAGAACTATTGGCATAGCCATCTGAAGAAGAGCTTGAAGATGAATGAAATCACAGCATCTGAGTTGAAGTCCAGGGCATGCGATAACAACAGTTTTGAAGGAAATTTAAAGGAGAGTCGTGAATATGAAAATTCTGAAAAACTAGGAGGAAATAGTGGTGATATCTTCCCTCATATTTTAGAAAGTTCAATGGCCATTTCCGCAGAAACACCAGAAGGAGAAAACTATTCGCTTAATGATGAAGAAGATGGTGTTCCTCCATTAGTATCGTACAAAGAATTCAGTGGTGATTTTTGGTCTGAGCCGTTCCTCGTAGAAGATAGTATTGATGATACTTATAAAGATGAGATTTGCAGTGGTAAAGGAATGGCTTTGTTGATTCCAAGCTTCGATGGCGCATATTTTTTGTAA 723 0.3845 MVRTPFYDKNGMKKGAWSKEEDDKLRAYVHRYGHSNWRQLPKFAGLARCGKSCRLRWLNYLRPNLKHGNYTREEEEIIIRLHQQFGNRWSLIAEKLPGRTDNEVKNYWHSHLKKSLKMNEITASELKSRACDNNSFEGNLKESREYENSEKLGGNSGDIFPHILESSMAISAETPEGENYSLNDEEDGVPPLVSYKEFSGDFWSEPFLVEDSIDDTYKDEICSGKGMALLIPSFDGAYFL 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01517 240 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Viun11g01517 240 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Viun11g01517 240 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Viun11g01517 240 CDD SANT 69 112 IPR001005 -
Viun11g01517 240 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Viun11g01517 240 CDD SANT 16 61 IPR001005 -
Viun11g01517 240 SMART sant 13 63 IPR001005 -
Viun11g01517 240 SMART sant 66 114 IPR001005 -
Viun11g01517 240 Gene3D - 13 66 - -
Viun11g01517 240 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Viun11g01517 240 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Viun11g01517 240 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 165 - -
Viun11g01517 240 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Viun11g01517 240 Gene3D - 69 141 - -
Viun11g01517 240 FunFam Transcription factor RAX3 7 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01517 Viun-Chr11 31343217 31344396 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01517 1 119 MYB Transcription Factor Family AT2G31180 65.546 1.90e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun11g01517 Myb_DNA-binding 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01517 K09422 - gmx:100781032 247.669