Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01514 ATGGTTAGAGCTCCCTATTTTGATAAAAATGGAACAAAGAAAGGAGCATGGTGTGAAGAAGAGGACAACAAGCTTATCGCTTATGTCGAAAAACATGGCCACCCCAATTGGCGTCAACTTCCAAAATTTGCAGGGTTGCAAAGATGTGGAAAAAGTTGCAGACTTCGATGGATGAATTACCTGCGGCCAAATCTAAAACGAGGGAACTACACCCCAAAGGAAGAGCAAATCATCACTGATTTGCATAAAAAGCATGGAAATAAATGGTCTCTGATTGCTGAAAGTTTACCCGGAAGAACAGACAATGAGATAAAGAACTATTGGCACAGCCACCTAAAGAAGTTTCAAAGCAGCAACAATAACACTTGTTGTGATGAAGATTTGAAGTCCAATGGATGCAAAGAGTTTGAAATGGCAATGGACGAAGCTCCTAGTGTTGAATCTCACCACATTTTGGAGAGTTCGGTGTCAGAAACTTCCTACACCGACCACAATTCCCCTTCACTTTCATTTTCTTCGAGTCACACAGAATCAACCATGAACTTGTGCAAGGAAGAAGAAAGTGTTGCTTCATGGGAAACATTGGATTTAGGGTTTAGTAGCAATTTCTGGACTGAACCCTTTATTTCAGAAAACGCACTTGATGAAGATTATTTTTCCATTTCCTCTTATGGGACAGAACCATTTTACTTGTGGTAG 699 0.4034 MVRAPYFDKNGTKKGAWCEEEDNKLIAYVEKHGHPNWRQLPKFAGLQRCGKSCRLRWMNYLRPNLKRGNYTPKEEQIITDLHKKHGNKWSLIAESLPGRTDNEIKNYWHSHLKKFQSSNNNTCCDEDLKSNGCKEFEMAMDEAPSVESHHILESSVSETSYTDHNSPSLSFSSSHTESTMNLCKEEESVASWETLDLGFSSNFWTEPFISENALDEDYFSISSYGTEPFYLW 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01514 232 CDD SANT 69 112 IPR001005 -
Viun11g01514 232 CDD SANT 16 61 IPR001005 -
Viun11g01514 232 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Viun11g01514 232 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Viun11g01514 232 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Viun11g01514 232 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Viun11g01514 232 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Viun11g01514 232 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Viun11g01514 232 FunFam MYB-related transcription factor 13 66 - -
Viun11g01514 232 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 185 - -
Viun11g01514 232 Gene3D - 69 114 - -
Viun11g01514 232 Gene3D - 7 66 - -
Viun11g01514 232 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Viun11g01514 232 SMART sant 66 114 IPR001005 -
Viun11g01514 232 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01514 Viun-Chr11 31307055 31308668 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01514 1 195 MYB Transcription Factor Family AT2G31180 46.635 4.32e-55 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun11g01514 Myb_DNA-binding 7.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01514 K09422 - gmx:100782270 380.178