Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01493 ATGCGTTGGTCTTCCAGATTCTTTCACACAGCCTCGAGGGTTTTCAATGAGTATCCATCATGGTCCAAGTCTATTCTTGTTTGCACTGTCATCAGTGGAGGAGGAGCAGTGGCATTTTGCGATGCAAAACCAGAATATGGCAATGAACCTCCAAAGAAGAAGGTGGTGGTGCTTGGAACTGGTTGGGCTGGAACCAGTTTTCTGAAAAATATGAAGAGCAACTCCTATGATATTCATGTGGTTTCACCACGTAACTATTTTGCATTCACTCCATTGCTACCAAGTGTAACCTGTGGCACAGTGGAAGCAAGGAGCGTCGTTGAACCCATTCGCAGTATCACTCGCACTAGCGGTGTAAATATTAATTTTAGTGAAGCTGAATGCTACAAGATCGATCAAAAGAACAACAAAGTTTTTTGTCGTGCTGTTAAAGAAAAAAATTCTGGTGAACGAGAAGAATTTTCCATTGATTATGATTACCTGGTAATAGCTATGGGAGGTCGTTCTAATACCTTCAACACACCTGGTGTTGAAGAACACGCCCATTTCCTTAAGGAAGTGGATGAAGCTCTAAAAATCCGTCGGAAAGTGGTTGAACTTTTTGAAAGGGCTAGCCTTCCTTCTTTACCGGTGGAAGAGAAGAAAAAGCTTCTGAGTTTTGTAGTTGTTGGTGGTGGTCCAACAGGGGTAGAATTTTCTGCTGAACTTCATGACTTTGTTCATGAAGATCTGGCTTATTTATATCCTGAACTTGAACAGTATGTGAATATTACTCTCTTGGAGGCAGGCGATCATATTCTAAACATGTTTGACCAGAGAATTACTGAATTTGCTGAACATAAGTTTGCCAGAGATGGCATTAATGTGAAGTTGGGATCTATGGTTGTGAAAGTTGGTGAAAACGAAATCACTTCCAAAGAAAGGTCAACTGGTGAAATTGTTACCATGCCTCACGGAATGGTAGTTTGGTCAACTGGTATTGGTGCTCGCCCTGAAATAGTTGAATTTATGAAACAGCTTGGCCAGATTAACAGACGTGCATTGGTCACTGATGAATGGCTAAGGGTGGAAGGATCTGACAACATCTATGCTCTTGGTGATTGTGCCACTATAAATCAACGTATGGTTATGGAAGATATAGCCGTGATATTTAGCAAGGCTGACAAGAACAATTCTGGAAAATTAGATCTTAAAGAATTTAAAGACGTTGTTGATGACATTATTGAAAGGTACCCTCAAGTGGAAATTTATTTAAAGAAGAACCAAATGAAAGACATGGCCAGCTTGCTAAAGAAATCTCAAGAAAGCGGCATTACAGTGGACATTGAATACTTCAAAGAAGCCCTTTCCAAAGTAGACTCTCAGATGAAAAATCTTCCTGCCACAGCTCAGGTAGCTGCACAGCAAGGAGTGTATCTTGCAGACTGTTTCAACCGCATGGAGTTGTGTGAGAGGTATCCTGAAGGCCCTCTCAGGTTCAGAGGAGTTGGTCGCCATCGATTCCGTCCCTTCAGGTACAAGCATTTAGGACAATTTGCTCCACTAGGAGGAGAACAAACTGCAGCTCAGCTTCCAGGAGATTGGATTTCAATTGGTCAGAGCACCCAGTGGCTCTGGTATTCAGTGTATACAAGCAAACAAGTGAGCTGGAGAACAAGGTTTTTGGTGGTTGGTGACTGGGGAAGAAGATTCATGTTTGGTAGGGATTCAAGTCAAATCTAA 1722 0.4193 MRWSSRFFHTASRVFNEYPSWSKSILVCTVISGGGAVAFCDAKPEYGNEPPKKKVVVLGTGWAGTSFLKNMKSNSYDIHVVSPRNYFAFTPLLPSVTCGTVEARSVVEPIRSITRTSGVNINFSEAECYKIDQKNNKVFCRAVKEKNSGEREEFSIDYDYLVIAMGGRSNTFNTPGVEEHAHFLKEVDEALKIRRKVVELFERASLPSLPVEEKKKLLSFVVVGGGPTGVEFSAELHDFVHEDLAYLYPELEQYVNITLLEAGDHILNMFDQRITEFAEHKFARDGINVKLGSMVVKVGENEITSKERSTGEIVTMPHGMVVWSTGIGARPEIVEFMKQLGQINRRALVTDEWLRVEGSDNIYALGDCATINQRMVMEDIAVIFSKADKNNSGKLDLKEFKDVVDDIIERYPQVEIYLKKNQMKDMASLLKKSQESGITVDIEYFKEALSKVDSQMKNLPATAQVAAQQGVYLADCFNRMELCERYPEGPLRFRGVGRHRFRPFRYKHLGQFAPLGGEQTAAQLPGDWISIGQSTQWLWYSVYTSKQVSWRTRFLVVGDWGRRFMFGRDSSQI 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01493 573 SMART efh_1 379 407 IPR002048 GO:0005509
Viun11g01493 573 ProSitePatterns EF-hand calcium-binding domain. 388 400 IPR018247 -
Viun11g01493 573 PRINTS FAD-dependent pyridine nucleotide reductase signature 158 176 - -
Viun11g01493 573 PRINTS FAD-dependent pyridine nucleotide reductase signature 55 74 - -
Viun11g01493 573 PRINTS FAD-dependent pyridine nucleotide reductase signature 347 369 - -
Viun11g01493 573 PRINTS FAD-dependent pyridine nucleotide reductase signature 219 237 - -
Viun11g01493 573 ProSiteProfiles EF-hand calcium-binding domain profile. 375 410 IPR002048 GO:0005509
Viun11g01493 573 SUPERFAMILY EF-hand 373 459 IPR011992 -
Viun11g01493 573 SUPERFAMILY FAD/NAD(P)-binding domain 52 271 IPR036188 -
Viun11g01493 573 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 43 404 - -
Viun11g01493 573 Gene3D - 424 572 - -
Viun11g01493 573 Gene3D - 46 423 - -
Viun11g01493 573 SUPERFAMILY FAD/NAD(P)-binding domain 220 372 IPR036188 -
Viun11g01493 573 Pfam Pyridine nucleotide-disulphide oxidoreductase 53 375 IPR023753 GO:0016491
Viun11g01493 573 PANTHER NADH DEHYDROGENASE 48 573 IPR045024 GO:0003954|GO:0006116
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01493 Viun-Chr11 31132429 31141245 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01493 7 573 Chloroplast and Mitochondria Gene Families AT4G21490 66.898 0.0 780
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01493 K03885 - gmx:100820044 1045.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g01493 11 31132429 31141245 Viun11g01493 11 31132429 31141245 ECH