Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01476 ATGTCTCTTAACAACAATTTCTTAACTGGAGAAATACCAGATGCTTTTCAGTCACTTACGCAATTGATCAATCTTGATTTATCTCATAATAATTTGAGTGGGGCATTGCCTTCTTCTATGGATAACTTGTCATCTCTGACCACCCTACGCTTACAAAACAATCAATTATCTGGGACACTTGATGTCTTACAAGACCTTCCTCTGAAAGATTTGAATATTGAGAACAACCAGTTTGCTGGCCCAATACCTCCAAAGTTGCTAAGCATCCCAGCCTTCAGGCAAGCTGGAAACCCATTTAATGTTAATGGTACAACAACAACTCCGGCTTCTTCACCTCGCTCCCCAGCAATAGCACCACCAGGAACTCCTATTTCTGGGACACCACCGGGAACTCCCATCTCTGGGTCACCACCATCTTCTGGCCGTGTACCTACTAAACAGGCCGATGGACCAGCTGCAGCAAATGAATCGCACACTGGGAAATCCAAAAATTCCACAAAAAGGGTGGTTTGGATATCTATTGGTAGTGTGTTGGGGTTCATTATTTTGTTACTAGGATTCATTCTCTTTATTCCAAGATGCAGCAGAAGAGAACGGGATGGCAGAAGGTCCAAGCATCAAATTGGTGCGTATGGGGCTGAAAGGGAAATGCCCAGGGGTAATGGGAGTTCAGTCCAACCACCTAGTCAAATTGAAAAAGTACCAGTAGGGGATGTTCCCAGGCCAAAAGAGGAACGTCAGGTAGAGAATAGGACAGTCTGGGCTAATCCAAGGCCAAAAGAAGGTCGTCAGGCAGAGATCAGGACAGTCTCGGCTATTCCAAATCCACATACAAATCCACGGAGTGAGCAAGAGAAGGATGTGCAAAGAATGGCAACAATACCAAACCCAGGCGATCATGAGATAGATATTAGTACACTAGAAGTATATTCAATGCCTCCTCCCCCTCCACCCCCACCACCTCCTCCACCACCACCTCCACCTCCACCTCCTACTACTGAGAAGGTGACTGTTGAGCCAGCCACATCGCGCAGAGCAACAAATGTCACTACGCACAAAAAAAGTTCAGTTCCTACTTTTACAAAGTTTTTTGGTATTGCATCCCTTCAACAGTATACAAATAGCTTTTCTCAAGAAAATCTTATAGGAGGAGGCATGCTTGGTAATGTGTATAGAGCTGAGCTTCCTAATGGCAAGTTTCTTGCTGTAAAGAAACTGGACAAGAGAGCTTCAGATAACCAGAAGGATGAGGAATTTCTTGAATTGATTAATAGTATTGACAGAATTAGGCATGCAAATGTTGTTGAGCTTGTTGGATACTGTTCCGAGCATGGTCAGAGGCTTCTTATATATGAGTACTGCAGTAATGGGTCACTGTATGATGCGCTCCACTCAGACGATGACTTCAAAACAACACTCTCATGGAATACTCGAATTCGAATAGCTCTTGGGGCAGCCAGAGCCTTAGAATATCTGCATGAGTTATGTCAGCCACCTGTAGTACACAGAAATTTGAAGTCTGCCAATATTCTACTTGATGATGATCTATCCGTGCGGGTCTCTGATTGTGGTTTAGCTCCATTAATAGCGTCAGGAGCAGTCAGTCAGCTCTCGGGGAACCTGTTAACTGCTTATGGCTATGGAGCTCCTGAATTTGAGTCTGGAATATACACATATCAAAGTGACGTGTACAGCTTTGGAGTGATCATGTTAGAACTTTTGACTGGCCGTCGGTCCCACGACAGGACACGTCCCCGGGGTGAGCAATTTCTGGCCAGATGGGCAGTTCCCCAACTTCATGATATTGAAGCCTTATCGAACATGGTTGATCCTGCTTTGAATGGAAATTACCCAGCAAAATCATTGTCAAATTTTGCAGACATTATCTCTAGATGCCTTCAGTCCGAGCCAGAATTTAGGCCAGCAATGTCCGAGGTTGTCTTATACTTACTAAATATGATAAAGAAGGAGTCTCAGCAAGGTGAATCAAATGAAAAATGA 2001 0.4418 MSLNNNFLTGEIPDAFQSLTQLINLDLSHNNLSGALPSSMDNLSSLTTLRLQNNQLSGTLDVLQDLPLKDLNIENNQFAGPIPPKLLSIPAFRQAGNPFNVNGTTTTPASSPRSPAIAPPGTPISGTPPGTPISGSPPSSGRVPTKQADGPAAANESHTGKSKNSTKRVVWISIGSVLGFIILLLGFILFIPRCSRRERDGRRSKHQIGAYGAEREMPRGNGSSVQPPSQIEKVPVGDVPRPKEERQVENRTVWANPRPKEGRQAEIRTVSAIPNPHTNPRSEQEKDVQRMATIPNPGDHEIDISTLEVYSMPPPPPPPPPPPPPPPPPPPTTEKVTVEPATSRRATNVTTHKKSSVPTFTKFFGIASLQQYTNSFSQENLIGGGMLGNVYRAELPNGKFLAVKKLDKRASDNQKDEEFLELINSIDRIRHANVVELVGYCSEHGQRLLIYEYCSNGSLYDALHSDDDFKTTLSWNTRIRIALGAARALEYLHELCQPPVVHRNLKSANILLDDDLSVRVSDCGLAPLIASGAVSQLSGNLLTAYGYGAPEFESGIYTYQSDVYSFGVIMLELLTGRRSHDRTRPRGEQFLARWAVPQLHDIEALSNMVDPALNGNYPAKSLSNFADIISRCLQSEPEFRPAMSEVVLYLLNMIKKESQQGESNEK 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01476 666 Gene3D Ribonuclease Inhibitor 1 111 IPR032675 -
Viun11g01476 666 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 454 664 - -
Viun11g01476 666 Gene3D Transferase(Phosphotransferase) domain 1 454 666 - -
Viun11g01476 666 Pfam Protein tyrosine and serine/threonine kinase 379 648 IPR001245 GO:0004672|GO:0006468
Viun11g01476 666 MobiDBLite consensus disorder prediction 113 135 - -
Viun11g01476 666 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 2 660 IPR046959 -
Viun11g01476 666 MobiDBLite consensus disorder prediction 98 112 - -
Viun11g01476 666 MobiDBLite consensus disorder prediction 214 353 - -
Viun11g01476 666 SUPERFAMILY Formin homology 2 domain (FH2 domain) 321 331 - -
Viun11g01476 666 Gene3D Phosphorylase Kinase; domain 1 336 453 - -
Viun11g01476 666 MobiDBLite consensus disorder prediction 336 353 - -
Viun11g01476 666 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 341 453 - -
Viun11g01476 666 Pfam Leucine rich repeat 2 56 IPR001611 GO:0005515
Viun11g01476 666 MobiDBLite consensus disorder prediction 310 335 - -
Viun11g01476 666 SUPERFAMILY Protein kinase-like (PK-like) 354 650 IPR011009 -
Viun11g01476 666 MobiDBLite consensus disorder prediction 98 166 - -
Viun11g01476 666 MobiDBLite consensus disorder prediction 237 251 - -
Viun11g01476 666 ProSiteProfiles Protein kinase domain profile. 376 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g01476 666 ProSiteProfiles Leucine-rich repeat profile. 45 67 IPR001611 GO:0005515
Viun11g01476 666 SUPERFAMILY L domain-like 3 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01476 Viun-Chr11 30939682 30944973 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01476 1 657 Strubbelig Receptor Gene Family AT4G03390 58.832 0.0 693
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Viun11g01476 PK_Tyr_Ser-Thr 2.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01476 - - mtr:25492087 874.004