Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01450 ATGGCGAATAACGGTGGAAAGTCCAGCAAAGAGGGTGTTGAAGAGATCCATCATCACAAGGTGTTTGGTGAAAGTGAAGGCCAGGATTCGGAGAAAGAGAAGGGAAAGGGTGTGGATTTGAGCTCAGGGAGGAGACAGTGGAAGCCAGTTTTTGATGATGCTTCTATCTCGCAAAGGCCTCTCAAGAAAATCCGCAGCCCCGAACACCAAAGCCCCAATCATCAACCTTCTTCATCATCTTCCTCTATGCTCTCTCTCCAACCTCCGTCGTCAAGAATAGTGTTTCCTTTCGCTTTTGAAGGCTCTCAGCACCCAATGCCATCATTCCCACACTCATTCGGAACCACAAATTTGCCTCTTTTTCGCCCCCCTCTTCAGCCAACGCAACAAATGATATCGTTTGGGTCCCAACAGAACATGGGGTATCCGCAATTCCTGTCCCCAGATTCCACCATACCAAACCAACAACAGCTCCAGCAACAGCAGCAGCAGTATCAGCAGCAGCAGCAGCTTCTTCAGTATTGGAATGACGCGCTCAATTTGAGTCCAAGAGGGAGGATGATGATGATGATGATGAACCGGTCAGGGCATGAAGGGAGACCACTGTTAAGGCCTCAAGCACAGCCTTTGAATGCCACCAAGCTCTATAGGGGAGTGAGGCAACGCCATTGGGGCAAATGGGTCGCCGAAATTCGTCTCCCTCGCAATAGAACTCGCCTCTGGCTAGGAACCTTCGACACTGCCGAAGATGCTGCTATGGCTTACGATCGTGAAGCCTTTAAGCTTAGAGGAGAAAATGCTAAGCTCAATTTCCCAGAACTCTTCCTTAACAAAGATAAAGCAGAAGCATCCACACCTGCTCCTGCTTCTTCTTCCAACGAAGGTTCAACATCAACATCAAGCCAGAACACTAAGCAACCTGAGCCAGTTCCAGAAGAGACCAACACTGAGAGTGAGGACATGCCACCAACAGAGACATTAGCAGAAGAGAATGCTGAAACCGAGGAAGGAGTTTCGCAGCCTCAGGAACTGGTTTGGGGAGAGTGGTTCAATACAATTCCTGCAGGTTGGGGTCCTGGGAGTCCAGTGTGGGATGATTTGGATCACAACAATAATCTTCTTCTGCATTCACAACTTCCCTTCGTGAATCAATCTCATCAAGAATTCCATCATGATGCCGCCGCTGCTTCTTCTCAGACACAACAAGATAACAACAACACAGGACCAGGTTCTTCCTCTCCCTCTTGTCCCATGAGGCCCTTCTTCTGA 1269 0.4894 MANNGGKSSKEGVEEIHHHKVFGESEGQDSEKEKGKGVDLSSGRRQWKPVFDDASISQRPLKKIRSPEHQSPNHQPSSSSSSMLSLQPPSSRIVFPFAFEGSQHPMPSFPHSFGTTNLPLFRPPLQPTQQMISFGSQQNMGYPQFLSPDSTIPNQQQLQQQQQQYQQQQQLLQYWNDALNLSPRGRMMMMMMNRSGHEGRPLLRPQAQPLNATKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENAKLNFPELFLNKDKAEASTPAPASSSNEGSTSTSSQNTKQPEPVPEETNTESEDMPPTETLAEENAETEEGVSQPQELVWGEWFNTIPAGWGPGSPVWDDLDHNNNLLLHSQLPFVNQSHQEFHHDAAAASSQTQQDNNNTGPGSSSPSCPMRPFF 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01450 422 CDD AP2 214 274 IPR001471 GO:0003700|GO:0006355
Viun11g01450 422 Coils Coil 158 178 - -
Viun11g01450 422 MobiDBLite consensus disorder prediction 281 341 - -
Viun11g01450 422 MobiDBLite consensus disorder prediction 70 87 - -
Viun11g01450 422 Pfam AP2 domain 216 264 IPR001471 GO:0003700|GO:0006355
Viun11g01450 422 MobiDBLite consensus disorder prediction 389 414 - -
Viun11g01450 422 Gene3D AP2/ERF domain 215 273 IPR036955 GO:0003700|GO:0006355
Viun11g01450 422 PRINTS Ethylene responsive element binding protein signature 238 254 IPR001471 GO:0003700|GO:0006355
Viun11g01450 422 PRINTS Ethylene responsive element binding protein signature 216 227 IPR001471 GO:0003700|GO:0006355
Viun11g01450 422 SMART rav1_2 215 278 IPR001471 GO:0003700|GO:0006355
Viun11g01450 422 SUPERFAMILY DNA-binding domain 215 273 IPR016177 GO:0003677
Viun11g01450 422 MobiDBLite consensus disorder prediction 10 41 - -
Viun11g01450 422 MobiDBLite consensus disorder prediction 313 332 - -
Viun11g01450 422 MobiDBLite consensus disorder prediction 1 87 - -
Viun11g01450 422 FunFam Ethylene-responsive transcription factor 2 214 273 - -
Viun11g01450 422 ProSiteProfiles AP2/ERF domain profile. 215 272 IPR001471 GO:0003700|GO:0006355
Viun11g01450 422 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 27 367 - -
Viun11g01450 422 MobiDBLite consensus disorder prediction 389 422 - -
Viun11g01450 422 MobiDBLite consensus disorder prediction 284 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01450 Viun-Chr11 30676207 30678275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01450 6 373 AP2-EREBP Transcription Factor Family AT2G20880 43.583 3.11e-64 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun11g01450 AP2 2.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01450 - - gmx:100811328 620.542