Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01440 ATGATGAATCAAATGATGTATTCTGACATAAACTCACGAATTGGAAGTTGCATGCCATTGTCTGCAATGCGAATTGGAACAATCATTCACAACATTGAATTGAACCCAGGGCAAGGTGGCAAGCTTGTCCGAGCTGCAGGAACTAGTGCAAAGATCTTGAAGGAGCCCACATCAGCATACTGTTTAATCCAGATGCCCTCAGGTGTTAAAAAGTTAATTGACTCTCGGTGTAGGGCCACCATTGGTGTTGTGTCTAATCCAAGCCATGGGGATCGCAAGCTTAGGAAGGCCGGACACAGCCGATGGCTTGGTCGAAGACCTGTTGTTCGAGGAGTGGCTATGAATCCCGTAGATCATCCTCATGGGGGAGGAGAGGGTAAAAGCAAGAGTAGTGGAAAATGGGGGAAAGGATCTCGCACTCCTTGGGGCAAGCCAACCAAGAGTGGCTATAAGACTGGACCCCTGAAGCGCAGAAGGTAG 480 0.4854 MMNQMMYSDINSRIGSCMPLSAMRIGTIIHNIELNPGQGGKLVRAAGTSAKILKEPTSAYCLIQMPSGVKKLIDSRCRATIGVVSNPSHGDRKLRKAGHSRWLGRRPVVRGVAMNPVDHPHGGGEGKSKSSGKWGKGSRTPWGKPTKSGYKTGPLKRRR 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01440 159 SUPERFAMILY Translation proteins SH3-like domain 14 148 IPR008991 -
Viun11g01440 159 ProSitePatterns Ribosomal protein L2 signature. 107 118 IPR022671 GO:0003735|GO:0005840|GO:0006412
Viun11g01440 159 SMART Ribosomal_L2_C_2 12 145 IPR022669 GO:0003735|GO:0005840|GO:0006412
Viun11g01440 159 FunFam 50S ribosomal protein L2 85 159 - -
Viun11g01440 159 FunFam 60S ribosomal protein L2, mitochondrial 8 84 - -
Viun11g01440 159 NCBIfam 50S ribosomal protein L2 9 156 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Viun11g01440 159 MobiDBLite consensus disorder prediction 113 159 - -
Viun11g01440 159 Pfam Ribosomal Proteins L2, C-terminal domain 14 143 IPR022669 GO:0003735|GO:0005840|GO:0006412
Viun11g01440 159 PANTHER RIBOSOMAL PROTEIN L2 7 158 IPR002171 GO:0003735|GO:0005840|GO:0006412
Viun11g01440 159 Gene3D Ribosomal protein L2, domain 3 85 159 IPR014726 -
Viun11g01440 159 Gene3D - 8 84 IPR014722 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01440 Viun-Chr11 30597134 30599469 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01440 4 124 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 41.860 1.71e-23 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01440 - - gmx:100792418 292.352