Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01425 ATGAACGTCATTAATTTACGATTTTGCCACTCTCCCCAACTCCTCCATTCACCAAATCTCTTCTTCGTTGTTCCTTCTTCATCACAAACTTCAAACTTCACCCTGAGAAACCCAACCACCCCATTTGCTATTTCCTTCAAAAATCGTTTCTTTTCTCCAATTCGTGCGTCGATGGCCTCCTCAGTCTCCGTCACGGAGAACGAAACAAAGCCATTTTCCGTTCTCTTCGTGTGCCTCGGCAACATCTGCAGAAGCCCCGCTGCCGAAGGAGTCTTCACCGACTTAGTCAACAAAAAGAGCCTCAATTCGCTGTTCAGAATTGATTCTGCTGGCACCATCAATTACCACGAGGGAAATGAAGCGGACCCGAGAATGAGGGCAGCCTCAAAGAGGCGTGGGATTCAGATAACTTCTATTTCAAGGCCAATCAAGCCCTCTGATTTCATTGACTTTGACCTCATTCTTGCTATGGACAAGCAGAACAGAGTGGACATATTGGAAGCTTTTAATAAATGGAAAGGAAAACATTCCTTACCGGATGATGCACATAAAAAGGTTAAGTTGATGTGCTCATATTGTAAGAAGCATGATGAAACTGAAGTCCCGGATCCCTATTATGGTGGAGCGCAGGGGTTTGAGAAGGTGTTGGATTTGCTCGAAGATGCTTGCGGATCATTACTGGAAACCATTTTGGCAGAAAATAAACATTTACAAGAATCCTAA 723 0.4412 MNVINLRFCHSPQLLHSPNLFFVVPSSSQTSNFTLRNPTTPFAISFKNRFFSPIRASMASSVSVTENETKPFSVLFVCLGNICRSPAAEGVFTDLVNKKSLNSLFRIDSAGTINYHEGNEADPRMRAASKRRGIQITSISRPIKPSDFIDFDLILAMDKQNRVDILEAFNKWKGKHSLPDDAHKKVKLMCSYCKKHDETEVPDPYYGGAQGFEKVLDLLEDACGSLLETILAENKHLQES 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01425 240 CDD LMWPTP 73 228 - -
Viun11g01425 240 PRINTS LMW phosphotyrosine protein phosphatase signature 201 216 IPR017867 GO:0004725|GO:0006470
Viun11g01425 240 PRINTS LMW phosphotyrosine protein phosphatase signature 117 133 IPR017867 GO:0004725|GO:0006470
Viun11g01425 240 PRINTS LMW phosphotyrosine protein phosphatase signature 74 91 IPR017867 GO:0004725|GO:0006470
Viun11g01425 240 SMART LMWPc_2 72 229 IPR023485 -
Viun11g01425 240 SUPERFAMILY Phosphotyrosine protein phosphatases I 70 230 IPR036196 -
Viun11g01425 240 FunFam Low molecular weight protein-tyrosine-phosphatase 71 235 - -
Viun11g01425 240 Gene3D - 56 235 - -
Viun11g01425 240 Pfam Low molecular weight phosphotyrosine protein phosphatase 74 227 IPR023485 -
Viun11g01425 240 PANTHER LOW MOLECULAR WEIGHT PHOSPHOTYROSINE PROTEIN PHOSPHATASE-RELATED 40 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01425 Viun-Chr11 30475105 30477536 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01425 6 234 Protein tyrosine phosphatase (PTP) family AT3G44620 55.469 1.83e-89 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01425 K25307 - gmx:100797254 390.578