Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01424 ATGAACGTCATTAATTTACGATTTTGCCACTCTCCCCAACTCCTCCATTCACCAAATCTCTTCTTCGTTGTTCCTTCTTCATCACAAACTTCAAACTTCACCCTGAGAAACCCAACCACCCCATTTGCTATTTCCTTCAAAAATCGTTTCTTTTCTCCAATTCGTGCGTCGATGGCCTCCTCAGTCTCCGTCACGGAGAACGAAACAAAGCCATTTTCCGTTCTCTTCGTGTGCCTCGGCAACATCTGCAGAAGCCCCGCTGCCGAAGGAGTCTTCACCGACTTAGTCAACAAAAAGAGCCTCAATTCGCTGTTCAGAATTGATTCTGCTGGCACCATCAATTACCACGAGGGAAATGAAGCGGACCCGAGAATGAGGGCAGCCTCAAAGAGGCGTGGGATTCAGATAACTTCTATTTCAAGGCCAATCAAGCCCTCTGATTTCATTGACTTTGACCTCATTCTTGCTATGGACAAGCAGAACAGAGTGGACATATTGGAAGCTTTTAATAAATGGAAAGGAAAACATTCCTTACCGGATGATGCACATAAAAAGGTTGGTGCAAGGTCTTGCTCTTCTTTGGGGCTTTTGTTTGGTCTACTTTTTGGTCTAACCAGGATTGTGATGATGCAGGTTAAGTTGATGTGCTCATATTGTAAGAAGCATGATGAAACTGAAGTCCCGGATCCCTATTATGGTGGAGCGCAGGGGTTTGAGAAGGTGTTGGATTTGCTCGAAGATGCTTGCGGATCATTACTGGAAACCATTTTGGCAGAAAATAAACATTTACAAGAATCCTAA 801 0.4419 MNVINLRFCHSPQLLHSPNLFFVVPSSSQTSNFTLRNPTTPFAISFKNRFFSPIRASMASSVSVTENETKPFSVLFVCLGNICRSPAAEGVFTDLVNKKSLNSLFRIDSAGTINYHEGNEADPRMRAASKRRGIQITSISRPIKPSDFIDFDLILAMDKQNRVDILEAFNKWKGKHSLPDDAHKKVGARSCSSLGLLFGLLFGLTRIVMMQVKLMCSYCKKHDETEVPDPYYGGAQGFEKVLDLLEDACGSLLETILAENKHLQES 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01424 266 CDD LMWPTP 73 254 - -
Viun11g01424 266 Pfam Low molecular weight phosphotyrosine protein phosphatase 74 170 IPR023485 -
Viun11g01424 266 Pfam Low molecular weight phosphotyrosine protein phosphatase 211 253 IPR023485 -
Viun11g01424 266 Gene3D - 56 261 - -
Viun11g01424 266 PANTHER LOW MOLECULAR WEIGHT PHOSPHOTYROSINE PROTEIN PHOSPHATASE-RELATED 40 261 - -
Viun11g01424 266 SUPERFAMILY Phosphotyrosine protein phosphatases I 70 256 IPR036196 -
Viun11g01424 266 PRINTS LMW phosphotyrosine protein phosphatase signature 117 133 IPR017867 GO:0004725|GO:0006470
Viun11g01424 266 PRINTS LMW phosphotyrosine protein phosphatase signature 74 91 IPR017867 GO:0004725|GO:0006470
Viun11g01424 266 PRINTS LMW phosphotyrosine protein phosphatase signature 150 165 IPR017867 GO:0004725|GO:0006470
Viun11g01424 266 SMART LMWPc_2 72 255 IPR023485 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01424 Viun-Chr11 30475105 30477540 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01424 6 260 Protein tyrosine phosphatase (PTP) family AT3G44620 57.308 1.46e-93 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01424 K25307 - gmx:100797254 376.326