LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun11g01417	ATGCAGCTCCACCACCGTGCCTCCACCGCGGCAAAAAGCCTAGCCTGCTTCAGCTTCGCCTTGAAACTCGTGCTGTTGTACGCGGCCGAGGGACAGTCTCAGCACCAGCACCGCGGTCCCGACCTACATTGGTACTCCGGAACCGCCACCTGGTACGGCGACCCCGAAGGAGACGGCAGCACCGGTGGGGCATGTGGGTATGGTTCGATGGTGGATGTGAAGCCATTTAGGGCGCGAGTGGGAGCAGTGGGGCCCTTGCTGTTCATGAATGGTGAAGGGTGTGGTGCCTGCTACAAGGTCAGGTGTTTGGACAAGAGCATATGTTCGAGACGAGCAGTGACAGTCATAATCACCGACGAGTGCCCGGGTTGCCCCTCCGACCAAACACACTTCGATCTCAGTGGTGCTGCCTTTGGTCGCATGGCCATTGCTGGCGAGAACGGTCCTCTCAGAGACCGTGGTCAAATCCCTGTCATTTACCGAAGAACACCGTGTAAATATCCAGGAAGAAAAATTGCTTTTCATGTTAACGAAGGCTCAACGCCATTTTGGCTATCACTTCTGGTTGAGTTTGAGGATGCAGAGGGAGATATTGGCTCCATGCATATACGAGAAGCAGGATCTACAGAATGGCTGCAGATGAATCACCTCTGGGGTGCAAATTGGTGCATTATTGGGGGACCTTTAAGGGGGCCATTCTCAGTGAAATTGAGCTCTTCCTCTGGTAGAAGCCTCTCTGCAAGAGATGTTATTCCAGGCAACTGGGTTTCAAAGGCAACTTACACTTCTCGTCTAAATTTCTACCCTTAG	810	0.5321	MQLHHRASTAAKSLACFSFALKLVLLYAAEGQSQHQHRGPDLHWYSGTATWYGDPEGDGSTGGACGYGSMVDVKPFRARVGAVGPLLFMNGEGCGACYKVRCLDKSICSRRAVTVIITDECPGCPSDQTHFDLSGAAFGRMAIAGENGPLRDRGQIPVIYRRTPCKYPGRKIAFHVNEGSTPFWLSLLVEFEDAEGDIGSMHIREAGSTEWLQMNHLWGANWCIIGGPLRGPFSVKLSSSSGRSLSARDVIPGNWVSKATYTSRLNFYP	269

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun11g01417	269	Gene3D	-	166	264	IPR036749	-
	Viun11g01417	269	Gene3D	-	29	165	IPR036908	-
	Viun11g01417	269	ProSiteProfiles	Expansin, Cellulose-binding-like domain profile.	183	263	IPR007117	-
	Viun11g01417	269	CDD	DPBB_EXPB_N	44	165	-	-
	Viun11g01417	269	Pfam	Expansin C-terminal domain	172	252	IPR007117	-
	Viun11g01417	269	ProSiteProfiles	Expansin, family-45 endoglucanase-like domain profile.	62	170	IPR007112	-
	Viun11g01417	269	FunFam	Beta-expansin 3	167	268	-	-
	Viun11g01417	269	Pfam	Lytic transglycolase	85	159	IPR009009	-
	Viun11g01417	269	SUPERFAMILY	PHL pollen allergen	170	263	IPR036749	-
	Viun11g01417	269	PRINTS	Expansin/Lol pI family signature	43	58	IPR007118	GO:0005576

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun11g01417	Viun-Chr11	30407259	30410571	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun11g01417	18	205	Expansin Gene Family	AT4G28250	70.213	8.64e-95	276

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun11g01417	K20628		-	gmx:100810778	509.605

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