Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01417 ATGCAGCTCCACCACCGTGCCTCCACCGCGGCAAAAAGCCTAGCCTGCTTCAGCTTCGCCTTGAAACTCGTGCTGTTGTACGCGGCCGAGGGACAGTCTCAGCACCAGCACCGCGGTCCCGACCTACATTGGTACTCCGGAACCGCCACCTGGTACGGCGACCCCGAAGGAGACGGCAGCACCGGTGGGGCATGTGGGTATGGTTCGATGGTGGATGTGAAGCCATTTAGGGCGCGAGTGGGAGCAGTGGGGCCCTTGCTGTTCATGAATGGTGAAGGGTGTGGTGCCTGCTACAAGGTCAGGTGTTTGGACAAGAGCATATGTTCGAGACGAGCAGTGACAGTCATAATCACCGACGAGTGCCCGGGTTGCCCCTCCGACCAAACACACTTCGATCTCAGTGGTGCTGCCTTTGGTCGCATGGCCATTGCTGGCGAGAACGGTCCTCTCAGAGACCGTGGTCAAATCCCTGTCATTTACCGAAGAACACCGTGTAAATATCCAGGAAGAAAAATTGCTTTTCATGTTAACGAAGGCTCAACGCCATTTTGGCTATCACTTCTGGTTGAGTTTGAGGATGCAGAGGGAGATATTGGCTCCATGCATATACGAGAAGCAGGATCTACAGAATGGCTGCAGATGAATCACCTCTGGGGTGCAAATTGGTGCATTATTGGGGGACCTTTAAGGGGGCCATTCTCAGTGAAATTGAGCTCTTCCTCTGGTAGAAGCCTCTCTGCAAGAGATGTTATTCCAGGCAACTGGGTTTCAAAGGCAACTTACACTTCTCGTCTAAATTTCTACCCTTAG 810 0.5321 MQLHHRASTAAKSLACFSFALKLVLLYAAEGQSQHQHRGPDLHWYSGTATWYGDPEGDGSTGGACGYGSMVDVKPFRARVGAVGPLLFMNGEGCGACYKVRCLDKSICSRRAVTVIITDECPGCPSDQTHFDLSGAAFGRMAIAGENGPLRDRGQIPVIYRRTPCKYPGRKIAFHVNEGSTPFWLSLLVEFEDAEGDIGSMHIREAGSTEWLQMNHLWGANWCIIGGPLRGPFSVKLSSSSGRSLSARDVIPGNWVSKATYTSRLNFYP 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01417 269 Gene3D - 166 264 IPR036749 -
Viun11g01417 269 Gene3D - 29 165 IPR036908 -
Viun11g01417 269 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 183 263 IPR007117 -
Viun11g01417 269 CDD DPBB_EXPB_N 44 165 - -
Viun11g01417 269 Pfam Expansin C-terminal domain 172 252 IPR007117 -
Viun11g01417 269 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 62 170 IPR007112 -
Viun11g01417 269 FunFam Beta-expansin 3 167 268 - -
Viun11g01417 269 Pfam Lytic transglycolase 85 159 IPR009009 -
Viun11g01417 269 SUPERFAMILY PHL pollen allergen 170 263 IPR036749 -
Viun11g01417 269 PRINTS Expansin/Lol pI family signature 43 58 IPR007118 GO:0005576
Viun11g01417 269 PRINTS Expansin/Lol pI family signature 211 225 IPR007118 GO:0005576
Viun11g01417 269 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576
Viun11g01417 269 PRINTS Expansin/Lol pI family signature 153 169 IPR007118 GO:0005576
Viun11g01417 269 PRINTS Expansin/Lol pI family signature 84 102 IPR007118 GO:0005576
Viun11g01417 269 PRINTS Expansin/Lol pI family signature 249 263 IPR007118 GO:0005576
Viun11g01417 269 FunFam Expansin B3 30 166 - -
Viun11g01417 269 SUPERFAMILY Barwin-like endoglucanases 43 169 IPR036908 -
Viun11g01417 269 SMART dpbb_1 80 160 IPR007112 -
Viun11g01417 269 PRINTS Major pollen allergen Lol pI signature 120 135 IPR005795 GO:0005576|GO:0019953
Viun11g01417 269 PRINTS Major pollen allergen Lol pI signature 142 157 IPR005795 GO:0005576|GO:0019953
Viun11g01417 269 PRINTS Major pollen allergen Lol pI signature 239 256 IPR005795 GO:0005576|GO:0019953
Viun11g01417 269 PRINTS Major pollen allergen Lol pI signature 174 189 IPR005795 GO:0005576|GO:0019953
Viun11g01417 269 PRINTS Major pollen allergen Lol pI signature 190 205 IPR005795 GO:0005576|GO:0019953
Viun11g01417 269 PANTHER EXPANSIN-B3 21 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01417 Viun-Chr11 30407259 30410571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01417 18 205 Expansin Gene Family AT4G28250 70.213 8.64e-95 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01417 K20628 - gmx:100810778 509.605