Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01407 ATGTCCACAGAGGCAACAGTTTCAGCGAGAACAACTAATCTAGATTCTCATTACATTCTAGATGCATATGAAACTGACATAATGCATAGAATGACAGAATGGGATGGACACCAACCGAATCTTAACATACATGTTCCAGTTTCATCTAGTTTAGCTATATATCTGAATCCACATTTCAATGCTTCGGGTGCTAGTTCTTCAATTGCTCACCATAATACAAGGCACACTGAAATTGGCATTCCTATATTACCCTACTATGGTTTTGGGGAATATATGATCACACATGACTCTAATGCTTTCATTCTAGGCAACTATTTAGGTGATCAACACTATCAATCCATTGCCCCTCTTTGGTCAGACCATCCGGAGTACCATGTCTTTAATTTTCAAACACAACCTGTGCAAGAGGTCAGAGGTCACTCAATCAACTTTCATCTCCCAAGCAGTTTTTCAACACCTATACAGAATGCTTCATTTGCGAGCGCATATATGCAGCAGCCTCCACCTCCTGGACATCGAATGAATTCTTCTCCTGTTGCCTTTCTTGAAACTGATGATAGTTTATTATACGACTATTATTTTGACTTGGACATCGAGAACATGTCATATGAGGAGGTTGTTGAGTATTTTGAACAAATTGGCAACGTAGGCACGGGCTTGTCAGAAGAAATTTTTACAAGAGTAGTGAAGACAAAAACGTTTTTAGCGCCTAATAACTTGGAGGGAGTAACTTCTGATGAACAAGAAATTGATCTTTGCGTTATATGTCAGGATGAATATAAGAACCAAGAGGAGATTGGAATTCTTCGATGCCGACATGAATACCACGTAGATTGCATAAGAAGATGGTTACATGAAAAAAATGTTTGTCCCATTTGCAAATCAGAAGTATTAGATCATGAATAG 906 0.3841 MSTEATVSARTTNLDSHYILDAYETDIMHRMTEWDGHQPNLNIHVPVSSSLAIYLNPHFNASGASSSIAHHNTRHTEIGIPILPYYGFGEYMITHDSNAFILGNYLGDQHYQSIAPLWSDHPEYHVFNFQTQPVQEVRGHSINFHLPSSFSTPIQNASFASAYMQQPPPPGHRMNSSPVAFLETDDSLLYDYYFDLDIENMSYEEVVEYFEQIGNVGTGLSEEIFTRVVKTKTFLAPNNLEGVTSDEQEIDLCVICQDEYKNQEEIGILRCRHEYHVDCIRRWLHEKNVCPICKSEVLDHE 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01407 301 CDD RING-H2_RNF24-like 251 297 - -
Viun11g01407 301 ProSiteProfiles Zinc finger RING-type profile. 253 294 IPR001841 -
Viun11g01407 301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 299 IPR013083 -
Viun11g01407 301 SUPERFAMILY RING/U-box 252 298 - -
Viun11g01407 301 Pfam Ring finger domain 252 294 IPR001841 -
Viun11g01407 301 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 75 298 IPR045191 GO:0061630
Viun11g01407 301 SMART ring_2 253 293 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01407 Viun-Chr11 30267527 30268994 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01407 186 298 C3H Transcription Factor Family AT2G15530 42.742 1.09e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01407 K19041 - vun:114170343 234.187