Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01398 ATGGGTTGCTTATGCTCTAAGAGTTCAGCTGTAGAGGACAGCAAGGTAGGTGTCACTAAGAAATTGCAATCGTATAGCACAAGGCCTTCAGAGTTGAATGTTTTGCGGTTGAATTCGACTAGGAGGGTTGATGAAGGTGGAGCTAAAGATGTGATAATAGAAGGTGGCCGTGTAAAAGGTTCATTGATTGACAAGAAGGCCAATGGTTCAGGGCAATTGTATGTTGATCATGATGGGAAGAAGAGAACAGAGAAGCCTGAAGTGACTGTTGTGGATCATATTGGCCCTGGAAGAATTCCAAAGGCTATAGAGGGAGAACAAGTTGCAGCTGGATGGCCAGAATGGCTTTCTTCTGTTGCTGGTGAAGCTATTAAGGGATGGATACCTCGGAGAGCGAATAATTTTGAGAAGTTGGACAAAATTGGGCAAGGAACTTATAGTACTGTTTATAAGGCAAGGGATGTGATTAACCGCAAGTTTGTTGCATTGAAGAAAGTACGCTTTGACAATCTTGATCCTGAGAGTGTGAAGTTTATGGCAAGGGAAATCCATGTTCTGCGTAGGCTTGACCATCCAAACATTATAAAATTGGAGGGCTTGGTAACGTCGCATATGTCTCGCAGCTTGTACCTTGTTTTTGAGTATATGGAGCATGATCTTACAGGACTTGCATCAAATCCTGAAATCAAGTTCTCTGAAGCACAGCTAAAGTGCTACATGCAGCAACTTCTTAGTGGATTGGATCATTGTCATAGTCATGGTGTGCTCCACCGCGACATAAAGGGCTCAAATCTTCTCATTGACAATAATGGAATCTTAAAAATCGCTGATTTTGGTTTGGCAAGTTTTTTTGACCCCCGCCACAGTGTCCCATTGACAAGCCGAGTAGTAACTCTATGGTATAGACCACCAGAACTTTTACTTGGAGCAAATCATTATGGGGTTGCAGTGGATTTGTGGAGCACTGGTTGCATACTGGGTGAACTATATACTGGAAGGCCCATTTTACCAGGAAAAACAGAGGTTGAGCAATTGCATCGAATTTTTAAACTTTGCGGTTCACCATCTGATGAGTATTGGCTTAAATTGCGGCTGTCACATTCAACAGTATTCAGGCCGCCACACCATTATAGACGATGTGTTGCTGAGACATTTAAGGACTACCCATCTACTGCTGTAAAACTTATAGAGACACTGCTTTCAGTAGAGCCAGCACAACGAGGGACTGCAGCAGCTGCTCTGAAAAGCGAGTTCTTTACATCAGAGCCTGTGCCTTGTGATCCATCAAGTTTACCAAAATATGCTCCCAGCAAGGAAATTGATGCTAAGTTACGAGATGAAGCCAGAAGGCAAGGAGCTATTGGAGGTAGGGACCAAAAAGTTGCCTCGGGAGTTAGACAAGAAAAAGGGAACAGGGCCAGCTTCACAGCAAAAGACAATACCGACCCAGCTGTATCAGTACAGCAAGGACGTTATTCCAGCTCAAAGAACCGAAGTGAATTATACAACCCTCATAGGGGAGCAGTGTCTGGGATTCTGGTTTTCCCTCACAAACAGTCAGAAGATGCTAAAGCAATGGAAAATAATTTCTCTGGGCATATATATAAGAAGCCATCACATTCAGGTCCATTAGTTGCTGGTTCTGTTTGGGCAAAGGGTGCAAAGGAAGTTGATGATGTACCTCCTGCTTCAATCAGAGGGAATCTATCAAAACTATCTGGTCTAGTGGCATCTAGGACATTGTTGCCAGAAGATCAGGAGGACAAATTGCACCACAGAAAACCAAGTGAAGTAAGAAAATCAATGGAGTCAACTAACGGATCAGAGTCCAGAAGAAGACAGGAACAAAAACGGATTGTTGATCACAATCAAATCGAAAGCAGAAGGGTCCCCACCGAAAAATCAACTCCGGGTGGGAGGGAGTCGATGGGAAACAAGATATACCTCTCAGGTCCATTAATGGTGTCATCAAGCAACATGGATCAGATGCTGAAAGAGCATGATCGAAAGATCCAAGAGTTTTCAAGACGAGCAAGAATTGACAAGTCAAGAGCAAGAGGAGAGAAAGTTCGTGCACAGCGGAAGTGGTGA 2091 0.4366 MGCLCSKSSAVEDSKVGVTKKLQSYSTRPSELNVLRLNSTRRVDEGGAKDVIIEGGRVKGSLIDKKANGSGQLYVDHDGKKRTEKPEVTVVDHIGPGRIPKAIEGEQVAAGWPEWLSSVAGEAIKGWIPRRANNFEKLDKIGQGTYSTVYKARDVINRKFVALKKVRFDNLDPESVKFMAREIHVLRRLDHPNIIKLEGLVTSHMSRSLYLVFEYMEHDLTGLASNPEIKFSEAQLKCYMQQLLSGLDHCHSHGVLHRDIKGSNLLIDNNGILKIADFGLASFFDPRHSVPLTSRVVTLWYRPPELLLGANHYGVAVDLWSTGCILGELYTGRPILPGKTEVEQLHRIFKLCGSPSDEYWLKLRLSHSTVFRPPHHYRRCVAETFKDYPSTAVKLIETLLSVEPAQRGTAAAALKSEFFTSEPVPCDPSSLPKYAPSKEIDAKLRDEARRQGAIGGRDQKVASGVRQEKGNRASFTAKDNTDPAVSVQQGRYSSSKNRSELYNPHRGAVSGILVFPHKQSEDAKAMENNFSGHIYKKPSHSGPLVAGSVWAKGAKEVDDVPPASIRGNLSKLSGLVASRTLLPEDQEDKLHHRKPSEVRKSMESTNGSESRRRQEQKRIVDHNQIESRRVPTEKSTPGGRESMGNKIYLSGPLMVSSSNMDQMLKEHDRKIQEFSRRARIDKSRARGEKVRAQRKW 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01398 696 Gene3D Phosphorylase Kinase; domain 1 122 217 - -
Viun11g01398 696 MobiDBLite consensus disorder prediction 676 696 - -
Viun11g01398 696 MobiDBLite consensus disorder prediction 474 501 - -
Viun11g01398 696 MobiDBLite consensus disorder prediction 583 645 - -
Viun11g01398 696 MobiDBLite consensus disorder prediction 583 635 - -
Viun11g01398 696 Pfam Protein kinase domain 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g01398 696 FunFam probable serine/threonine-protein kinase At1g54610 122 217 - -
Viun11g01398 696 CDD STKc_CDK9_like 135 419 - -
Viun11g01398 696 PANTHER CELL DIVISION PROTEIN KINASE 133 425 - -
Viun11g01398 696 SUPERFAMILY Protein kinase-like (PK-like) 128 427 IPR011009 -
Viun11g01398 696 ProSitePatterns Protein kinases ATP-binding region signature. 141 164 IPR017441 GO:0005524
Viun11g01398 696 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Viun11g01398 696 SMART serkin_6 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g01398 696 Gene3D Transferase(Phosphotransferase) domain 1 218 457 - -
Viun11g01398 696 ProSiteProfiles Protein kinase domain profile. 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g01398 696 MobiDBLite consensus disorder prediction 450 503 - -
Viun11g01398 696 FunFam probable serine/threonine-protein kinase At1g54610 218 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01398 Viun-Chr11 30074480 30080098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01398 127 461 Core Cell Cycle Gene Families AT5G10270 48.148 2.97e-109 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Viun11g01398 Pkinase 2.3e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01398 - - gmx:100807590 1236.86