Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01395 ATGCACACACCACTTCATTCATCTTTCTATGTTCTAAACTCAGAGCTTGGTGGAGAATTGAACTGCATAACAATGGATCAGCTTGGAATTCAACCCTCTTCAACCAAGGTTGAAAGAAGACTCGTTGAGAAGAACAGAAGAAACCAGATGAAGATCCTCTTCAACAAACTCAACTCTCTTCTCCCTAGCTACAACCCCAAGGAAGCATTGGCACTGCCTGATCAAGTGGATGAGGCAATCAACTACATAAAGAGTTTGGAGGCGAAGGTGAAGATGGCAGAAGAGAAGAAAGAGAGTTTGCAGGGTAGTAAGAAAAGATACCGTGGTTGCTTCTCCAATAATAACAGTGCTAATTTTGCTGCAACACCACTCCCAAAATCTCCACAACTTGAGATTCAAGAAGTGGGTTCTTCCCTACAAGTTGTTCTGACTACAGGGATAGGTAACCAGTTCATTTTCCATCAAATCATTCGAATGCTGCATGAGGAGAACATAGAGGTTAGAAGTGCCCATTCCTCACTCGCTGGAGACTCGGTGCTTCATGTTGTGCATGCTGAGATTCCTCAATCTTTTCTTCAATTCGGAGCTACCAAAGTAAGTGAGAGGTTGAAAAGGTTTGTAAATGGATCCTACAGTGACGTGGAAACACAACACGAGTGGTGGGATTTTGATATTGGTTCTGATGATATCTGGAGTTTTTAG 702 0.4259 MHTPLHSSFYVLNSELGGELNCITMDQLGIQPSSTKVERRLVEKNRRNQMKILFNKLNSLLPSYNPKEALALPDQVDEAINYIKSLEAKVKMAEEKKESLQGSKKRYRGCFSNNNSANFAATPLPKSPQLEIQEVGSSLQVVLTTGIGNQFIFHQIIRMLHEENIEVRSAHSSLAGDSVLHVVHAEIPQSFLQFGATKVSERLKRFVNGSYSDVETQHEWWDFDIGSDDIWSF 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01395 233 SMART finulus 40 92 IPR011598 GO:0046983
Viun11g01395 233 FunFam Transcription factor bHLH162 28 112 - -
Viun11g01395 233 Coils Coil 76 103 - -
Viun11g01395 233 Gene3D - 31 113 IPR036638 GO:0046983
Viun11g01395 233 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 34 86 IPR011598 GO:0046983
Viun11g01395 233 Pfam Helix-loop-helix DNA-binding domain 37 87 IPR011598 GO:0046983
Viun11g01395 233 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 33 109 IPR036638 GO:0046983
Viun11g01395 233 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 33 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01395 Viun-Chr11 30014614 30015683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01395 34 211 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 38.462 4.03e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun11g01395 HLH 4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01395 - - vun:114170573 450.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g01395 11 30014614 30015683 Viun11g01395 11 30014614 30015683 ECH