Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01383 ATGTCACTGCAGGCTCTGAAGGAAACTCTGCAACCTTGTTCGACCCAAAAACCCTCTTCCTCTTCTACAATTACCCAAACACAGAGCAATTCAATTCTTCGTGACTACGATTCCCTCTTCCCAATCCACAGAAAACCTCCAAAATCATCTCTTTCCGACCAGCTTCGCCGCCTTAACGACTCACTATCCCCAATACACTCCAAAACCCTACAACAAGAAGAAAAAAAAGAGGAGCTACTAGAAGAAGAAGAAGAACCTGAGATAGAGAGACCAAAATTCGCTTCAGTTAAATTACCACAGTTTCAATTTGACCACACTGGACCCTTTGAGCCTCTCCTCCTGTCTTCGCATGGAGAATTTCCTGTAGTTCAGGTTCCTGCATCTATAAACTGTAGACTGCTAGAGCATCAAAGAGAGGGTGTGCGGTTTTTGCATGGTTTGTACAAGAACAATCATGGAGGCATGCTTGGAGATGACATGGGTCTAGGGAAGACCATCCAAGCAATAGCATTTCTTGCTGCTGTCTTTGGTAAAGAACATTCTACCCTAAATGAAAACCAGCTAGAGAAAAGAGACCCTGCATTAATAATATGCCCAACATCTGTTATCCACAACTGGGAGAGCGAATTCTCTAAGTGGTCTAACTTCAGTGTTTCTATTTATCATGGTGCAAACCGAGATTTGATATTTGATAAATTGGAAGCAAATGGAGTAGAGATACTTATTACCAGTTTTGACACATACAGGATTCATGGAAGTCTGTTGTCAGATGTCAAATGGAATGTTGTGATTGTCGATGAGGCTCATCGACTTAAGAATGAGAAATCAAAACTCTATAAAGCATGTTTACAAATTAAAACCCTTAGACGATATGGTCTCACTGGGACTATAATGCAAAATAAGATAATGGAACTGTTCAATCTCTTCGACTGGGTTTCACCCGGATCTCTTGGAACACGGGAACACTTTCGTGACTACTATGATGAACCCCTTAAGCATGGCCAGAGGTCAACTGCTCCTGATAGGTTTGTACAAATTGCTAATAAGAGAAAACAACACCTTGTGGAAGTTCTTCATAAATATATGTTGAGAAGGACAAAGGAAGAGACCATCGGGCATCTTATGATGGGTAAGGAAGATAACATTGTGTTTTGTGCAATGAGTGATGTGCAGAAACGTATTTACAGGAGAATGTTACAGCTTCCTGATATTCAATGCCTTATAAATAAGAACTTGCCATGTAGTTGTGGTAGCCCTCTCACTCAAGTTGAATGTTGCAAGAGGATAGTACCAGATGGAGTTATTTGGCCTTACTTGCATAGAGATAACCCAGATGGCTGTGATTCATGTCCCTTTTGCCTTGTCCTTCCGTGCCTTGTCAAGCTCCAACAGATAAGCAATCACCTTGAGCTCATCAAACCAAACCCCAAAGATGACCCTGAGAAACAAAGTAAAGATGCAGAGTTTGCTGCTGCTGTCTTTGGCCCTGATATTGATTTAGTGGGTGGGAGAACACAAAATGAAAGTTTCATGGGTCTAAGTGATGTGAAACATTGTGGCAAAATGCGAGCGCTTGAGAAGCTATTGTTCTCATGGTTTTCACAGGGCGACAAAGTTCTTTTGTTTAGCTATTCAGTAAGGATGCTGGACATACTGGAGAAATTTCTTATTCGAAAAGGCTACTGCTTCTCAAGACTTGATGGGTCCACTCCTACTAATTTACGCCAATCCCTGGTTGATGATTTCAACTCAAGTCCAAGCAAACAAGTGTTCCTGATATCAACTCGTGCTGGTGGGCTTGGATTGAACCTTGTCAGTGCAAACCGTGTTGTAATATTTGACCCTAACTGGAACCCTGCTCAAGACTTACAGGCTCAGGACAGGTCCTTTCGATTTGGACAGAAGCGGCATGTCGTGGTGTTCCGTCTTCTTGCAGCTGGTTCACTTGAAGAACTTGTTTACTCACGTCAGGTGTATAAGCAGCAGCTCTCCAACATTGCTGTCTCCGGAAAGATGGAAAAACGATATTTTGAAGGCGTCCAGGACTGCAAAGAATTTCAAGGAGAGCTATTTGGTATTTCCAATTTATTCCGAGATTTGTCAGATAAGCTATTTACCAGTGAGATCATTGAACTGCATAAAGAACATGGACGCGAAACAGAACAATTGGAAGAAGTAAATCTGTCAGAACAAAGAGGTTCATCGGTATCAGAGTCAGAAACCAGATTATGTCATAAGTCTGCTGGGGCTGCAACAAGTAAACAAGATCTTGAAGACCTTGGCATTGTATATACTCATCGCAATGAAGACATTGTCAACTTTGGACCTGGGATTCAAGGGAAAATAAATGCCAGCATCCCATCAAATGATAGCTTAGTCAAACCAAACATCTCTTTGGACCATCAAAGAAAAATACCAGAAAAAAGTAAAGTTCGTTTGATTGATGATAGGAAGAGAACCCAATATAAGCTCCTTGCTCAGTCTATGGGCATGGAAGAGCTTGCTTTTAGCAAATGGTTATTATCAGCGACTCCACTTGAGAGAGAAAAAGTGCTTCTTGACTACAAAAAGAAAAAGAAGATGCCTAATGGTTGA 2595 0.4143 MSLQALKETLQPCSTQKPSSSSTITQTQSNSILRDYDSLFPIHRKPPKSSLSDQLRRLNDSLSPIHSKTLQQEEKKEELLEEEEEPEIERPKFASVKLPQFQFDHTGPFEPLLLSSHGEFPVVQVPASINCRLLEHQREGVRFLHGLYKNNHGGMLGDDMGLGKTIQAIAFLAAVFGKEHSTLNENQLEKRDPALIICPTSVIHNWESEFSKWSNFSVSIYHGANRDLIFDKLEANGVEILITSFDTYRIHGSLLSDVKWNVVIVDEAHRLKNEKSKLYKACLQIKTLRRYGLTGTIMQNKIMELFNLFDWVSPGSLGTREHFRDYYDEPLKHGQRSTAPDRFVQIANKRKQHLVEVLHKYMLRRTKEETIGHLMMGKEDNIVFCAMSDVQKRIYRRMLQLPDIQCLINKNLPCSCGSPLTQVECCKRIVPDGVIWPYLHRDNPDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPKDDPEKQSKDAEFAAAVFGPDIDLVGGRTQNESFMGLSDVKHCGKMRALEKLLFSWFSQGDKVLLFSYSVRMLDILEKFLIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVVVFRLLAAGSLEELVYSRQVYKQQLSNIAVSGKMEKRYFEGVQDCKEFQGELFGISNLFRDLSDKLFTSEIIELHKEHGRETEQLEEVNLSEQRGSSVSESETRLCHKSAGAATSKQDLEDLGIVYTHRNEDIVNFGPGIQGKINASIPSNDSLVKPNISLDHQRKIPEKSKVRLIDDRKRTQYKLLAQSMGMEELAFSKWLLSATPLEREKVLLDYKKKKKMPNG 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01383 864 Coils Coil 65 85 - -
Viun11g01383 864 FunFam Switch 2 115 364 - -
Viun11g01383 864 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 145 315 IPR014001 -
Viun11g01383 864 Gene3D - 113 364 IPR038718 -
Viun11g01383 864 SMART ultradead3 129 323 IPR014001 -
Viun11g01383 864 MobiDBLite consensus disorder prediction 62 88 - -
Viun11g01383 864 PANTHER SNF2/RAD54 FAMILY MEMBER 26 800 - -
Viun11g01383 864 Pfam SNF2-related domain 150 405 IPR000330 GO:0005524|GO:0140658
Viun11g01383 864 Gene3D - 377 732 IPR027417 -
Viun11g01383 864 Pfam Helicase conserved C-terminal domain 521 633 IPR001650 -
Viun11g01383 864 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 365 IPR027417 -
Viun11g01383 864 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 369 688 IPR027417 -
Viun11g01383 864 CDD SF2_C_SNF 515 644 - -
Viun11g01383 864 MobiDBLite consensus disorder prediction 727 741 - -
Viun11g01383 864 SMART helicmild6 550 633 IPR001650 -
Viun11g01383 864 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 524 677 IPR001650 -
Viun11g01383 864 MobiDBLite consensus disorder prediction 720 741 - -
Viun11g01383 864 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01383 Viun-Chr11 29857355 29862969 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01383 522 663 RAD5 or RAD16-like Gene Family AT5G43530 39.437 5.48e-23 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Viun11g01383 SNF2_N 5.9e-56 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01383 K20098 - gmx:100781003 1513.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g01383 11 29857355 29862969 Viun11g01383 11 29857355 29862969 ECH