Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01379 ATGGCGGTTGAGCAAGACGTTGGGGAGTCGAAAAAGCTTGAGTGTGACGAATGTGAAAGGGCAGTTATTGACAAGACAAATTCTGCTCTCCTCGTTTTAAAGGCGAGATCGTGCAGAATTTGGAGAGCTATGTACTGGACTAGAGGATTGATTCGGTTACAGACCGAGAGGACAAGTGGGTTTTGGTATCGGGGAATCCCCGCATTGATTGAGTATGTGTATGAATATGGGAAATCACTGAATTTCAATTGGGATGATAGTTTATTAAATGACTATTATTTTGACTTGGACATCGAGAACATGTCATATGAGGAGGTTGTTGAGTATTTTGAACAAATTGGCAACGTAGGCACGAGCTTGTCAGAAGAAATTTTTACAAGAGTAGTGAAGACAAAAACTTTTTTAGCGCCTAATAACTTGGAGGGAGTAACTTCTAATGAACAAGAAACTGATATTTGCGTTATATGTCAGGATGAATATAAGAACCAAGAGGAGATTGGAATTCTTCGATGCCGACATGAATACCACGTAGATTGCATAAGAAGATGGTTACATGAAAAAAATGTTTGTCCCATTTGCAAATCAGAAGTATTAGATCATGAATAG 606 0.3878 MAVEQDVGESKKLECDECERAVIDKTNSALLVLKARSCRIWRAMYWTRGLIRLQTERTSGFWYRGIPALIEYVYEYGKSLNFNWDDSLLNDYYFDLDIENMSYEEVVEYFEQIGNVGTSLSEEIFTRVVKTKTFLAPNNLEGVTSNEQETDICVICQDEYKNQEEIGILRCRHEYHVDCIRRWLHEKNVCPICKSEVLDHE 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01379 201 ProSiteProfiles Zinc finger RING-type profile. 153 194 IPR001841 -
Viun11g01379 201 SMART ring_2 153 193 IPR001841 -
Viun11g01379 201 SUPERFAMILY RING/U-box 152 198 - -
Viun11g01379 201 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 95 198 IPR045191 GO:0061630
Viun11g01379 201 CDD RING-H2_RNF24-like 151 197 - -
Viun11g01379 201 Pfam Ring finger domain 152 194 IPR001841 -
Viun11g01379 201 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 200 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01379 Viun-Chr11 29805436 29813148 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01379 96 198 C3H Transcription Factor Family AT2G15530 44.762 2.15e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01379 K19041 - vun:114170343 422.55