Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01375 ATGGTGTGTTTGGGGGTTGACATGGTTGAGGTTGACTTTCAAAGGTTGGAACTTGAGAAGAGGGAAGTGAGGATTTTGTTGAGAATTTCATGTGGTTGGTTGGTGTTTTTGTTGTTTCTGAGTCCTGTGGCGGGTTTGAGACCCTTAAGGGATAGAACCAATTCCTGGGGTGATGAGTGGGTTTTTACAAGAAAAGACGAAAGTGACTTAGGTCCATTCTCACAATGGAACATAACTGGAACTTACAGAGGGACTTGGAAGTTTTTAGATACTACAAATGGTTCTACCAGATTTCCAGACATCAGAAAAATAAATGGAAATTCTGTAATTGAATTAGTTAGTGTGCCAACAAAGATAACTGGTGTACATTATGTGCAGGGGGTAGTCATATTCCATGATGTATTTGACAATGAATACAATGTTGGTGGTGCTCAAATCAGAGTAGAAGGTGTATATATATGGCCTTATAGGCAGCTTCGAATGGTAGCCAACAGTGGTAAAGATGGGGGACTAAATCCGGAGGGAGACTATATTTTATCAAATCCATATCATCTGCTTGGAGTTTTCTCATCTCAAGTATTCCAAGAATCTTCGCGACAAAAGATGTGGAGAAGAAAGCACTCTCCATTGCACGGAATGGAGAAACATTGCAATGTAGAAATAGCTGCACAGGTTTCACGCCTGTCATTGTCAAAGCATGAAGGGGAGCGTGATTCTTTTCAGCTAGTAGGGTTAATGGAGAGTCCGTCTGTGGACGATGATGGGGACTGCTTCTCGCCTTTACAGTTAAATGCAACTTCTATCAACATTGAAGTCTACTATAATAAAGCAGTGAACTATACCTTAATGGTTACTTTTATCTCATTTTTGCAAGTTCTTCTTTTAATTCGGCAAATGGAGCATAGCAACACCCAATCGGGGGCTGCTAAGGTTTCAATATTAACGATTGGTCAGCAAGCTATAGTAGATGCTTATCTTTGCCTTATACATTTGACTGCTGGAATACTAGTTGAATCCTTGTTCAATGCTTTTGCAACTGCTGCATTTTTCAAGTTTGTGGTATTCTCAATATTTGAGATGAGATATCTCCTTGCCATCTGGAAGGCAAGTAGGCCTTTGAGCAATGGTGAAGGTTGGGAGGCAATGAGGCGTGAACTATCAGTTTTATACAGCCGATTCTATGGGATCCTACTGGGAGGCATACTGCTCATGTATGAATTCCACAATCATTTGAGACTTATTCTTCTTCTTGTATACTCCTTTTGGATACCTCAGATAATCACCAATGTTGTTCGTGACTCACGCAAGCCATTGCATCCTCATTACATATTAGGCATAACTGTTACTCGGCTAGCAATCCCATTATATATTTTTGGTTGTCCTAACAACTTCTTGCGTATAGAACCAGATCATAGCTGGTGTGTTTGTTTGGCTATATTTGTTGGACTTCAAGCTGCAATTCTCTTGCTTCAGCACTATTTTGGGTCTATGTGGTTCATTCCTCGTCAGTTTCTACCTGAGAAATACTGCTACTATAGGAGGTTTACTCAAGATACAAATCGCTCCACTGACTGTGTTATATGCATGACAGCCATTGATCTTTCTCCACGATCCAATGATTGCATGGTGACACCTTGTGATCATTTCTTCCACTCTGGTTGTTTGCAAAGATGGATGGATATAAAGATGGAGTGCCCAACATGCCGTCGCCCTCTTCCACCTGCCTGA 1728 0.4091 MVCLGVDMVEVDFQRLELEKREVRILLRISCGWLVFLLFLSPVAGLRPLRDRTNSWGDEWVFTRKDESDLGPFSQWNITGTYRGTWKFLDTTNGSTRFPDIRKINGNSVIELVSVPTKITGVHYVQGVVIFHDVFDNEYNVGGAQIRVEGVYIWPYRQLRMVANSGKDGGLNPEGDYILSNPYHLLGVFSSQVFQESSRQKMWRRKHSPLHGMEKHCNVEIAAQVSRLSLSKHEGERDSFQLVGLMESPSVDDDGDCFSPLQLNATSINIEVYYNKAVNYTLMVTFISFLQVLLLIRQMEHSNTQSGAAKVSILTIGQQAIVDAYLCLIHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPLSNGEGWEAMRRELSVLYSRFYGILLGGILLMYEFHNHLRLILLLVYSFWIPQIITNVVRDSRKPLHPHYILGITVTRLAIPLYIFGCPNNFLRIEPDHSWCVCLAIFVGLQAAILLLQHYFGSMWFIPRQFLPEKYCYYRRFTQDTNRSTDCVICMTAIDLSPRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPPA 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01375 575 Pfam Ring finger domain 524 569 IPR001841 -
Viun11g01375 575 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 512 575 IPR013083 -
Viun11g01375 575 PANTHER RING ZINC FINGER PROTEIN 131 574 - -
Viun11g01375 575 CDD RING-H2_TUL1-like 519 574 - -
Viun11g01375 575 ProSiteProfiles Zinc finger RING-type profile. 525 569 IPR001841 -
Viun11g01375 575 FunFam E3 ubiquitin-protein ligase, putative 511 575 - -
Viun11g01375 575 SMART ring_2 525 568 IPR001841 -
Viun11g01375 575 SMART ringv_2 524 569 IPR011016 GO:0008270
Viun11g01375 575 SUPERFAMILY RING/U-box 505 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01375 Viun-Chr11 29670951 29682465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01375 525 572 C3H Transcription Factor Family AT4G12190 39.583 1.10e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01375 K23788 - gmx:100802452 1098.19