Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01370 ATGATCACCACCGCGCTCAGCCATTCACCCGGTTTCACAATTGCGGCTAATGCACCGGAGGACCCTCTCGTACCTTTTCTCTGGTCTATCAAGAAAGCCCTAGAAGCTTCGGGCGATTCCACTCCAAATCTCAGTAACTTACTCAGAGATTGCATCAGAAACTTCAAGAACAATGACCGGTATCGGAACGACGTCAGATTCCTCAAGATCTGGCTCATCTATATGGGAGTCAGCGATGATTTTGTCGTTGTATTCAAAGAAATGCTGGACAGTAATGTATGTGCCAATAATTCTGCACTTTATGTTTGGTCTGCAAGTTTATTTGAGTTGAAGGGAAGATTGCGTGATGCTCTCTCTATCTACCAGCTTGGGATTGGCAGGAACGCGAAGCCAGTTGTGTGGTTGAGGGAGGCTCATACCTTATTTCTCAATAGAATGTCTGAAATACAGAATGCTGCTTCAAACCTGAAGGTTGATGATATAGAATCCATGAAATTGGAAAATAGTGGCATCAATCCTTGGGACACTTCCACCATGGATAGCATGTTAAAGACGATACATCCTTTACTTATGAAATTTGATGGGTATCGTTCAAGCCCTAAACCATACTCAGGAAAAGTGGCATTATCTTCGTTGAAGAATTCATCAAGGAATAAAGTTATTGAGATAGGTGGAATGAAGTACCTTATAAAGGGATGTGCTGGACAGGGTGGTTTTGCCCAAGTATATAAGGCTAATGCCAACAGTGATCCCGACAATGTTGTTGCTCTAAAGATACAAAAACCAGCTTTCCCGTGGGAATTTTACATTTATCGTCAGCTTGATCTGCGGATCTTAGACAGAGAGAGGTCAAGTTATGGTTTCGCTCACCGAATTCATCTCTATTCTGACTGTAGTATACTCATCTGTGACTATTTAGCTAATGGGACGCTACAGGATGTGGTGAACTCATATCTGGTCTTAGGAAAATCCATGGAAGAAGTGTTATGCATTTATTACACTATTGAAATGTTAAACATGGTTGAAACTTTGCATGGTGTTGGCTTGATTCATGGTGATTTCAAGCCTGATAATCTGCTAATTCGATATGCTAGGAGTGACCTTACTGAAGATGGGTTCTTGAACCGAAGTGGTCCTTGGTGTGATCAGGGTCTTTGCCTTGTTGACTGGGGAAGAGGGATTGATCTGCAACTCTTTCCAGATCACACGGTATTTAAGGGTGATTGCAGAACTTCTGGTTTTCGCTGCATTGAGATGCTAGAGAACAAGCCGTGGAAATTTCAGGTAGATGCGTATGGCCTTTGCGCTAATGTTCATGTGATGTTGCATGGTTCCTATATGGAAGTCGTCAAAAAAGAACAATCTGATGGGGGCTACGTGTATCTTCCCAAACTACCCTTTAAACGTTACTGGAACATTGAGCTCTGGAAGAGTTTCTTCACTAAAATGCTAAACCAATACCCCCATGATGATGATAGGAGTTTGCTGCATGACTTGAAGAAGTCCTTCCAAGACTATATGACCTCCAATCCCCAGCTTATAAAGAAACTAAAGGAGTTACTCTCAAGGCAAAGGGCTTCCATGTGTTCCGCTTAA 1596 0.4236 MITTALSHSPGFTIAANAPEDPLVPFLWSIKKALEASGDSTPNLSNLLRDCIRNFKNNDRYRNDVRFLKIWLIYMGVSDDFVVVFKEMLDSNVCANNSALYVWSASLFELKGRLRDALSIYQLGIGRNAKPVVWLREAHTLFLNRMSEIQNAASNLKVDDIESMKLENSGINPWDTSTMDSMLKTIHPLLMKFDGYRSSPKPYSGKVALSSLKNSSRNKVIEIGGMKYLIKGCAGQGGFAQVYKANANSDPDNVVALKIQKPAFPWEFYIYRQLDLRILDRERSSYGFAHRIHLYSDCSILICDYLANGTLQDVVNSYLVLGKSMEEVLCIYYTIEMLNMVETLHGVGLIHGDFKPDNLLIRYARSDLTEDGFLNRSGPWCDQGLCLVDWGRGIDLQLFPDHTVFKGDCRTSGFRCIEMLENKPWKFQVDAYGLCANVHVMLHGSYMEVVKKEQSDGGYVYLPKLPFKRYWNIELWKSFFTKMLNQYPHDDDRSLLHDLKKSFQDYMTSNPQLIKKLKELLSRQRASMCSA 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01370 531 SMART mad3_bub1_i 14 125 IPR013212 -
Viun11g01370 531 ProSitePatterns Serine/Threonine protein kinases active-site signature. 349 361 IPR008271 GO:0004672|GO:0006468
Viun11g01370 531 SUPERFAMILY Protein kinase-like (PK-like) 227 507 IPR011009 -
Viun11g01370 531 FunFam Mitotic checkpoint serine/threonine-protein kinase BUB1 226 528 - -
Viun11g01370 531 Pfam Protein kinase domain 234 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g01370 531 Pfam Mad3/BUB1 homology region 1 18 125 IPR013212 -
Viun11g01370 531 ProSiteProfiles BUB1 N-terminal domain profile. 10 169 IPR013212 -
Viun11g01370 531 PANTHER MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1 162 525 IPR015661 GO:0007094
Viun11g01370 531 SMART serkin_6 228 507 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g01370 531 Gene3D - 12 161 - -
Viun11g01370 531 ProSiteProfiles Protein kinase domain profile. 228 531 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g01370 531 Gene3D Transferase(Phosphotransferase) domain 1 226 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01370 Viun-Chr11 29578612 29584476 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01370 222 361 MAP Kinase Kinase Kinase Kinase AT3G15220 28.082 7.15e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK BUB Viun11g01370 Pkinase 6.7e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01370 K02178 - gmx:100783171 941.414