Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01368 ATGCCCGCTCAGAAGCGTTCCTTCCCCGATTCTCCTTACGATCACCACCACCACACCAAACATCACCACCAAGAAAAAACTGAGGAAGAAGAAGATGCACAACAACAAGAGGATAATTACGAATCAAACGGTTCAGATTCTCACCGCGCCCCGTCTTCTCCCTCCGAAGACAATTCCGAATTTGTTTTTGTAGAGCTTCTTGAAATTCGCAAAGAAGTCCAATGTCCAATTTGTCTTGGTATTATTAAGAAGACACGAACAGTTATGGAATGCTTGCACCGGTTTTGCAGAGAATGCATTGACAAGTCGATGCGACTGGGGAACAATGAATGCCCTGCTTGTCGGACACACTGTGCCAGTCGTCGTTCTTTGAGAGATGATCCGAACTACGATGCTCTAATTGCAGCTTTATATCCAGACATTGAGAAGTACGAGGAAGAGGAGCTTGAGTTTCGTGAAGAGGACAAGAACCGCAATAAGCTGATTCAAGCTTCAATTGCAAAAGTTGTTCAACGACAATCTGAAGCACTGGTTAAGAGACGTAGAGATACACCAGGCTCATTTGTAACAAGATCACAGCGCAATCAACGAAATGTTCTTTCTAGGAGACAAAACCAAGTAATTGATAATCAAGGATCTGAAGATAATGAGGATGAAAATGATAATAATGAAAAGGACTCATCTTCCACAGATGAGCGATGTACAGAATTTAGGCAGAGAAGGCGAAAGAGGCGAACCCGAGTTCGGCCTTCTCAGCCATCATCATCGACAGCAAGTCCTGAGGGTGGATGCATAGAAAGTGATGTGGACGTAAGAGAGAATCGAGGAATTTCTTCTAGACCGTTGTCAAAACCTCAAAAGCTAACTTGGGGAAGGGGTGGTTTTAGGAGTCACACACGGCATGGCAGTGGCAGTGGCAATGGTATCAATAGCAAAAGTGCCCGCAGTAGCCGCTTGGCAAAGTTAGTTGATTATCTCCGTAATTTGAATGAAAACACTGATGAGTTAGACGTCCATCTCATTCTTTTGTCTCTGGACAAACAAAGTACACCAAGCTTGCAGCAGCCACACCTTTGCTGTCGACCAACTTTGTCTGTGAAGCACCTTTGTGAGTATGTTGCTGGCCAGACATCTTTGCCAATTGAAGACGTTGAGATATTGGCAGTTAAAGGATGCTGCAATACAGTCTGTGACAAGTCGTTTGATGAGACTTCATCCTTTGATGAGTTAACGGCACTGATTATAGATCCTAGCAAAGATGAATTGGAAACTCTGCAAGGGCATGAATCTTTGACAGAACTTAAATCCAAATGTATATCTCAAAGGGCGCATATGATTCTGGCATACAGGCGGAAGGAGTGA 1362 0.4391 MPAQKRSFPDSPYDHHHHTKHHHQEKTEEEEDAQQQEDNYESNGSDSHRAPSSPSEDNSEFVFVELLEIRKEVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIEKYEEEELEFREEDKNRNKLIQASIAKVVQRQSEALVKRRRDTPGSFVTRSQRNQRNVLSRRQNQVIDNQGSEDNEDENDNNEKDSSSTDERCTEFRQRRRKRRTRVRPSQPSSSTASPEGGCIESDVDVRENRGISSRPLSKPQKLTWGRGGFRSHTRHGSGSGNGINSKSARSSRLAKLVDYLRNLNENTDELDVHLILLSLDKQSTPSLQQPHLCCRPTLSVKHLCEYVAGQTSLPIEDVEILAVKGCCNTVCDKSFDETSSFDELTALIIDPSKDELETLQGHESLTELKSKCISQRAHMILAYRRKE 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01368 453 ProSiteProfiles Zinc finger RING-type profile. 75 115 IPR001841 -
Viun11g01368 453 ProSitePatterns Zinc finger RING-type signature. 91 100 IPR017907 -
Viun11g01368 453 Pfam Zinc finger, C3HC4 type (RING finger) 74 114 - -
Viun11g01368 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 145 IPR013083 -
Viun11g01368 453 Coils Coil 144 164 - -
Viun11g01368 453 MobiDBLite consensus disorder prediction 38 57 - -
Viun11g01368 453 MobiDBLite consensus disorder prediction 188 211 - -
Viun11g01368 453 MobiDBLite consensus disorder prediction 173 313 - -
Viun11g01368 453 Coils Coil 23 43 - -
Viun11g01368 453 PANTHER OS11G0578200 PROTEIN 12 452 IPR044592 -
Viun11g01368 453 SMART ring_2 75 114 IPR001841 -
Viun11g01368 453 MobiDBLite consensus disorder prediction 1 57 - -
Viun11g01368 453 CDD RING-HC_RING1-like 72 137 - -
Viun11g01368 453 SUPERFAMILY RING/U-box 64 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01368 Viun-Chr11 29566976 29573172 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01368 68 138 C3H Transcription Factor Family AT3G23060 35.135 8.34e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01368 K10695 - gmx:100819311 697.582