Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01367 ATGCCCGCTCAGAAGCGTTCCTTCCCCGATTCTCCTTACGATCACCACCACCACACCAAACATCACCACCAAGAAAAAACTGAGGAAGAAGAAGATGCACAACAACAAGAGGATAATTACGAATCAAACGGTTCAGATTCTCACCGCGCCCCGTCTTCTCCCTCCGAAGACAATTCCGAATTTGTTTTTGTAGAGCTTCTTGAAATTCGCAAAGAAGTCCAATGTCCAATTTGTCTTGGTATTATTAAGAAGACACGAACAGTTATGGAATGCTTGCACCGGTTTTGCAGAGAATGCATTGACAAGTCGATGCGACTGGGGAACAATGAATGCCCTGCTTGTCGGACACACTGTGCCAGTCGTCGTTCTTTGAGAGATGATCCGAACTACGATGCTCTAATTGCAGCTTTATATCCAGACATTGAGAAGTACGAGGAAGAGATTCAAGCTTCAATTGCAAAAGTTGTTCAACGACAATCTGAAGCACTGGTTAAGAGACGTAGAGATACACCAGGCTCATTTGTAACAAGATCACAGCGCAATCAACGAAATGTTCTTTCTAGGAGACAAAACCAAGTAATTGATAATCAAGGATCTGAAGATAATGAGGATGAAAATGATAATAATGAAAAGGACTCATCTTCCACAGATGAGCGATGTACAGAATTTAGGCAGAGAAGGCGAAAGAGGCGAACCCGAGTTCGGCCTTCTCAGCCATCATCATCGACAGCAAGTCCTGAGGGTGGATGCATAGAAAGTGATGTGGACGTAAGAGAGAATCGAGGAATTTCTTCTAGACCGTTGTCAAAACCTCAAAAGCTAACTTGGGGAAGGGGTGGTTTTAGGAGTCACACACGGCATGGCAGTGGCAGTGGCAATGGTATCAATAGCAAAAGTGCCCGCAGTAGCCGCTTGGCAAAGTTAGTTGATTATCTCCGTAATTTGAATGAAAACACTGATGAGTTAGACGTCCATCTCATTCTTTTGTCTCTGGACAAACAAAGTACACCAAGCTTGCAGCAGCCACACCTTTGCTGTCGACCAACTTTGTCTGTGAAGCACCTTTGTGAGTATGTTGCTGGCCAGACATCTTTGCCAATTGAAGACGTTGAGATATTGGCAGTTAAAGGATGCTGCAATACAGTCTGTGACAAGTCGTTTGATGAGACTTCATCCTTTGATGAGTTAACGGCACTGATTATAGATCCTAGCAAAGATGAATTGGAAACTCTGCAAGGGCATGAATCTTTGACAGAACTTAAATCCAAATGTATATCTCAAAGGGCGCATATGATTCTGGCATACAGGCGGAAGGAGTGA 1320 0.4379 MPAQKRSFPDSPYDHHHHTKHHHQEKTEEEEDAQQQEDNYESNGSDSHRAPSSPSEDNSEFVFVELLEIRKEVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIEKYEEEIQASIAKVVQRQSEALVKRRRDTPGSFVTRSQRNQRNVLSRRQNQVIDNQGSEDNEDENDNNEKDSSSTDERCTEFRQRRRKRRTRVRPSQPSSSTASPEGGCIESDVDVRENRGISSRPLSKPQKLTWGRGGFRSHTRHGSGSGNGINSKSARSSRLAKLVDYLRNLNENTDELDVHLILLSLDKQSTPSLQQPHLCCRPTLSVKHLCEYVAGQTSLPIEDVEILAVKGCCNTVCDKSFDETSSFDELTALIIDPSKDELETLQGHESLTELKSKCISQRAHMILAYRRKE 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01367 439 ProSiteProfiles Zinc finger RING-type profile. 75 115 IPR001841 -
Viun11g01367 439 SUPERFAMILY RING/U-box 64 147 - -
Viun11g01367 439 Coils Coil 141 161 - -
Viun11g01367 439 ProSitePatterns Zinc finger RING-type signature. 91 100 IPR017907 -
Viun11g01367 439 PANTHER OS11G0578200 PROTEIN 12 438 IPR044592 -
Viun11g01367 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 144 IPR013083 -
Viun11g01367 439 MobiDBLite consensus disorder prediction 38 57 - -
Viun11g01367 439 Pfam Zinc finger, C3HC4 type (RING finger) 74 114 - -
Viun11g01367 439 Coils Coil 23 43 - -
Viun11g01367 439 SMART ring_2 75 114 IPR001841 -
Viun11g01367 439 MobiDBLite consensus disorder prediction 1 57 - -
Viun11g01367 439 CDD RING-HC_RING1-like 72 137 - -
Viun11g01367 439 MobiDBLite consensus disorder prediction 174 197 - -
Viun11g01367 439 MobiDBLite consensus disorder prediction 161 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01367 Viun-Chr11 29566976 29573173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01367 73 229 C3H Transcription Factor Family AT2G30580 26.347 1.88e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01367 K10695 - gmx:100819311 678.707