Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01364 ATGAGCACCATTTGTGCAGAGCACAAGTTCCAACTTCAACCCTCTCACCACCTTCTCTCCCTCAAAAAATCCCTCAGAGACATCGACATCCCGCCAAGGAAGCTTCTCACGCGCCGCTCCGCCGCCGACATGTTTTCCGACGACACCCTCCTGCACAAGTACCTGCCCCACATCGACTCCGACGACTCTGATGACGTCGGAGACCCTTACGCCTCCGACGAATTCCGCATGTTCGAGTTCAAGGTTCGTCGCTGCACTCGTAGCCGGAGCCACGACTGGACAGACTGCCCTTTTGCACACCCCGGCGAGAAGGCTCGCCGCCGCGATCCTCGCCGGTTTCACTACTCCGGGACGGTGTGCCCGGAGTACCGCCGCGGGCAGTGTAGCAGCGGCGATGCATGCGAGTTCTCCCATGGCGTGTTCGAGTGCTGGTTGCACCCTTCAAGGTATAGAACCGAGGCTTGCAAGGATGGGAAAAATTGCAAGCGAAAAGTTTGCTTTTTCGCCCACACCCCTCGCCAACTCAGAGTTTTGCCTCCCCAAGACAGTAACAAGAAGAAAAAGTGCAGCAACATGAGTCCTCATAATCATAACAATAACAACAATAACAGTAACCATTGTTGTTTGTTCTGTCATTGTTCATCCACTTGTTCACCAACTTCTACCTTGTTTGGCATGTCTCATTTTTCTCCACCTTTATCACCCTCTTCATCTTCCTCTTCTCCTTCCCTGCCTAGCCACCGCCATGGTGTTGTGAGCTACAAGGATGTGTTCTCCGAGCTCATGTGCGCCATGGAGGGTTTGAATTTTGGCGAGGCTTCATCTGTGTCTGCTTCAAAGCCTCACACTCTGTCTTGGCTTGATGTCTCCGAGGATCATAAACAGTTCAATGTTCATTCTCCAACCACAGCTACTTGTGGAAGCTTTTGTAATGGGAATGGAAGGTTTTTGAGGGAAGAAAGCGGAAGCTTTTCCATGAATGGAAATGGAAGATTTTTGAGGGAAGAAAGTGGGGTTGTTGATGATGTCATTGTCCCAGATCTGGCCTGGGTTAATGACTTGCTGATGTAG 1071 0.5117 MSTICAEHKFQLQPSHHLLSLKKSLRDIDIPPRKLLTRRSAADMFSDDTLLHKYLPHIDSDDSDDVGDPYASDEFRMFEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTVCPEYRRGQCSSGDACEFSHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHTPRQLRVLPPQDSNKKKKCSNMSPHNHNNNNNNSNHCCLFCHCSSTCSPTSTLFGMSHFSPPLSPSSSSSSPSLPSHRHGVVSYKDVFSELMCAMEGLNFGEASSVSASKPHTLSWLDVSEDHKQFNVHSPTTATCGSFCNGNGRFLREESGSFSMNGNGRFLREESGVVDDVIVPDLAWVNDLLM 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01364 356 ProSiteProfiles Zinc finger C3H1-type profile. 115 141 IPR000571 GO:0046872
Viun11g01364 356 SMART c3hfinal6 149 172 IPR000571 GO:0046872
Viun11g01364 356 SMART c3hfinal6 114 140 IPR000571 GO:0046872
Viun11g01364 356 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 119 139 IPR000571 GO:0046872
Viun11g01364 356 PANTHER UNKEMPT FAMILY MEMBER 50 355 IPR045234 -
Viun11g01364 356 Gene3D - 114 178 - -
Viun11g01364 356 FunFam Zinc finger CCCH domain-containing protein 66 72 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01364 Viun-Chr11 29502681 29504191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01364 58 242 C2H2 Transcription Factor Family AT5G12850 47.568 1.67e-52 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun11g01364 zf-CCCH 9.4e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01364 K23047 - gmx:100820375 488.804