Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01355 ATGGTCGCCAAGGACAAAACGGTCATTAAGAATAAGAAGCCAAACAATGCCGCCGACGAGGTTCACTACCGCGGCGTCCGCAAGCGGCCCTGGGGCCGCTACGCCGCCGAGATCCGCGACCCCGGCAAGAAATCCCGCGTCTGGCTAGGCACCTTCGACACCGCCGAGGAAGCCGCCAGAGCCTATGACGCCGCCGCCCGCAACTTCCGCGGCCCCAAAGCCAAAACCAACTTCCCCCTTCTCCCCGACACAGCCGCCGCCGCCGCCGCTAACAACATCAACAACCTTAACCGGAACAACAACAACAACATAACAAACAACGCTAGCAGCAGCAGCAGCCCTAGCCAGAGCAGCACCGTCGAGTCCGCCACCCCGGAGCGTGACGTCACGCGCCGCGCCGCCACTGCCGTTATCGACCGCTTCCCCTTCCTCCCGATCCAGCAGCAGCTGCTCGTGACCCCGGTCGCTCCTGTTCGCCCGGTTTTTCTCCTGGACCGGGCCCATTACCTCACCCACCAATTCCCCTTCCGGTTCGAACCGGCCCCGGTTCAGAGCGACTCCGATTCCTCCTCCGTTGTCGATTGCCAGCCCAAAAGAGAACTCAATCTCGATCTCAACCTGGCTCCTCCTATGGATTATTAA 642 0.6168 MVAKDKTVIKNKKPNNAADEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAARNFRGPKAKTNFPLLPDTAAAAAANNINNLNRNNNNNITNNASSSSSPSQSSTVESATPERDVTRRAATAVIDRFPFLPIQQQLLVTPVAPVRPVFLLDRAHYLTHQFPFRFEPAPVQSDSDSSSVVDCQPKRELNLDLNLAPPMDY 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01355 213 MobiDBLite consensus disorder prediction 97 129 - -
Viun11g01355 213 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Viun11g01355 213 FunFam Ethylene-responsive transcription factor 2 21 80 - -
Viun11g01355 213 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Viun11g01355 213 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Viun11g01355 213 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Viun11g01355 213 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 15 149 - -
Viun11g01355 213 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Viun11g01355 213 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677
Viun11g01355 213 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Viun11g01355 213 CDD AP2 22 79 IPR001471 GO:0003700|GO:0006355
Viun11g01355 213 MobiDBLite consensus disorder prediction 97 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01355 Viun-Chr11 29469006 29470034 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01355 20 211 AP2-EREBP Transcription Factor Family AT5G44210 46.939 1.89e-49 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun11g01355 AP2 5.8e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01355 K09286 - gmx:100801924 270.011