Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01339 ATGCTTGCCGTGGCACCTTTGAGGAGCATCAAAGATGAAAAGAACAAAGGAGAGATGGAGGGTTTCTCGAAGGCAGCAAAAACAGCATCAGATGATGTTGACTTCGATGAACTTTCTGAAGGGAACTTGTTGGAGAGCATCAACTTCGACGATCTCTTCGTCGGCATCGACGTCGGCGGAGATATCTTGCCGGACTTGGAGATGTTTGGTGAGTTTTCCGTCAGCGCCGGGGAAGAGTCGTCGGAGATGAACTCATCGAAGGAGGAGAACGACCAGAATTGTGTTTTCACTGAAAAAAAGGAAGAAGAAGACAAAAGTTGTTGTGCTGCTTCAGGTCATGAAGACTCGGGGTCAAACCGGAGCAAGAATGGTGAACCGGTGGTGGTGAATCCTGCGCCAAAAGAAGGTGGAAAAGGAAGAAAATCTTCATCGGGTCAGTTGAAGAATAATAGTAATAGTAATAATCCTCACGGGAAGAGAAAAGTGAAGGTGGATTGGACCCCAGAATTGCACAGGCGATTTGTGCAAGCTGTGGAACAGTTAGGAGTGGACAAAGCAGTGCCTTCAAGAATTTTGGAGATTATGGGAATCGATTGTTTAACTCGTCATAACATTGCAAGTCACCTTCAAAAATATAGATCTCATAGGAAACACCTTCTGGCTCGTGAGGCTGAAGCAGCAAGTTGGAGTCAAAGGAGAAACATGTATGGTGTTGGGAAGAGAGAGGTGAGTCCATGGCTAGCACCCACCATGGGGTTCCCTCCTCCAATGACCACAATGCACCATTTTAGACCTCTACACGTGTGGGGGCACCCCTCCATGAACCATTCCTTCATGCACGTGTGGCCCAAACACCTTCCACCTTCACCACCACTCTCATGGCCATCACCTGCACCACCACATGACCCTTCATTTTGGCACCAACGGGCTCCAAATGCTCTAATACCAGGAACAGCTTGTTACCCACAACCTCTGACACCAACGGGTTTTGGAACTCACCATGTCCCTGGCATCCCACCCCATGCCATGTACAAAGCAGATCACAGCATTGCCATCCATGGTCCTCGTCCTCTATTAGATTTTCACCCGTCAAAAGAGAGCATAGATGCAGCTATTGGAGATGTTTTATCAAAGCCATGGCTGCCATTACCTCTTGGACTGAAGGCTCCAGCAATTGACAGTGTGATGAGTGAATTACAGAGACAAGGGATTCCAAACATTCCACCTTCCAGTGCTTGA 1239 0.4786 MLAVAPLRSIKDEKNKGEMEGFSKAAKTASDDVDFDELSEGNLLESINFDDLFVGIDVGGDILPDLEMFGEFSVSAGEESSEMNSSKEENDQNCVFTVXKKEEEDKSCCAASGHEDSGSNRSKNGEPVVVNPAPKEGGKGRKSSSGQLKNNSNSNNPHGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWSQRRNMYGVGKREVSPWLAPTMGFPPPMTTMHHFRPLHVWGHPSMNHSFMHVWPKHLPPSPPLSWPSPAPPHDPSFWHQRAPNALIPGTACYPQPLTPTGFGTHHVPGIPPHAMYKADHSIAIHGPRPLLDFHPSKESIDAAIGDVLSKPWLPLPLGLKAPAIDSVMSELQRQGIPNIPPSSA 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01339 413 MobiDBLite consensus disorder prediction 77 93 - -
Viun11g01339 413 MobiDBLite consensus disorder prediction 77 97 - -
Viun11g01339 413 MobiDBLite consensus disorder prediction 109 166 - -
Viun11g01339 413 Pfam Myb-like DNA-binding domain 165 214 IPR001005 -
Viun11g01339 413 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 159 218 IPR017930 -
Viun11g01339 413 FunFam Two-component response regulator 158 221 - -
Viun11g01339 413 Gene3D - 159 220 - -
Viun11g01339 413 NCBIfam myb-like DNA-binding domain, SHAQKYF class 162 216 IPR006447 GO:0003677
Viun11g01339 413 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 412 IPR044825 GO:0003700|GO:0045893
Viun11g01339 413 MobiDBLite consensus disorder prediction 143 158 - -
Viun11g01339 413 SUPERFAMILY Homeodomain-like 160 219 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01339 Viun-Chr11 29355500 29360383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01339 1 354 G2-like Transcription Factor Family AT5G44190 39.896 4.57e-65 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Viun11g01339 Myb_DNA-binding 5.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01339 - - gmx:100777595 601.282