Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01331 ATGGCTTCGGTTGTTAAAGGAACTGAAGCCATAGGTGAGGACGCAATTGCTACGGTGGCGCGTCATGTCCACGCACCACCGGCATGGAAGCATTACCGAGGTGTGAGGCGCAGGCCATGGGGGAAGTTCACGGCGGAGATAAGGGATCCGAAGAAGAACGGAGCTAGGGTTTGGCTTGGAACTTTTGACATGGAGGAGAAAGCGGCGAGGAAGGAAGAGAAGGATGCGTCGCTGCTTGTTCCCCTCCGTACTCTCCAAACACTACGACACTCTCTCATCCGACGAAGCCTCCGCCGCCGCTCACCAGATCGAGGGTTGGTGGCGCAATGGTTGGTGGAGCGGTGGCTGGTGGCGCAGTTGGTGCATGAAGATGGCTTTGGTTCTCATATACTCGAAGCAAAAAAGTCCCTCTATGGCTCCGGTCCTTTGCAACCGAGATCAAAGGTTCCTCCTTTTGGTCTCATCTCAATATGTCTCGGGTTTAAAACCGAGGCAAAATGA 501 0.5429 MASVVKGTEAIGEDAIATVARHVHAPPAWKHYRGVRRRPWGKFTAEIRDPKKNGARVWLGTFDMEEKAARKEEKDASLLVPLRTLQTLRHSLIRRSLRRRSPDRGLVAQWLVERWLVAQLVHEDGFGSHILEAKKSLYGSGPLQPRSKVPPFGLISICLGFKTEAK 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01331 166 SMART rav1_2 31 95 IPR001471 GO:0003700|GO:0006355
Viun11g01331 166 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Viun11g01331 166 PRINTS Ethylene responsive element binding protein signature 55 71 IPR001471 GO:0003700|GO:0006355
Viun11g01331 166 Gene3D AP2/ERF domain 30 77 IPR036955 GO:0003700|GO:0006355
Viun11g01331 166 ProSiteProfiles AP2/ERF domain profile. 31 91 IPR001471 GO:0003700|GO:0006355
Viun11g01331 166 PANTHER DNA-BINDING DOMAIN 26 71 IPR044808 GO:0003700|GO:0009873
Viun11g01331 166 Pfam AP2 domain 31 71 IPR001471 GO:0003700|GO:0006355
Viun11g01331 166 CDD AP2 30 70 IPR001471 GO:0003700|GO:0006355
Viun11g01331 166 SUPERFAMILY DNA-binding domain 31 74 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01331 Viun-Chr11 29129481 29130242 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01331 17 137 AP2-EREBP Transcription Factor Family AT2G44840 42.308 9.87e-20 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun11g01331 AP2 1.1e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01331 K09286 - vun:114180832 117.087