Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01330 ATGCTGAGAAAGATGGATGAAGGAGAAATCATCACCAATGCTTTCCCTCACAACCTAACTGCTTCTGCTGCATCAAATACTAACAATCCTCCTCCTGCTTTGAAGAGGAAGAGAAACCTCCCAGGAAACCCAGATCCTGAAGCTGAAGTTGTGGCCTTATCGCCAAAGACACTCATGGCTACCAACAGATTCTTGTGTGAAACCTGTGGGAAGGGTTTTCAGAGGGATCAAAATCTTCAGCTCCATCGACGAGGACACAACCTTCCTTGGAAGCTTAAGCAGAGAACGGGGAAGGAAGCGAGGAAGAGGGTTTATGTGTGCCCAGAGAAGAGTTGTGTCCACCACGACCCTTCAAGGGCTCTTGGAGATTTAACTGGGATAAAGAAGCACTTTTGCAGAAAGCACGGTGAAAAGAAGTGGAAGTGCGAGAAGTGCTCAAAGCGTTATGCCGTGCAGTCGGATTGGAAAGCACACTCCAAGACCTGTGGCACCAGAGAATATAAATGTGACTGTGGAACTATCTTTTCAAGGAGGGACAGTTTCATCACTCACAGGGCCTTCTGTGATGCTTTGGCAGAAGAAACAGCAAGGGTAAATGCATCATCAGACATGAACACCTCTTTAGGGGGTAACATCGGTTACAACGTGATTGGAACTTCTCTAGGCCATAACATGGCAACCCATTTTTCTTCAATTTTCAAGCCAGTTTCAAGCACAGAAGAAGAAACAAATAATCAAACATCTAGGGGACTACCCCTTTGGATGGGTCAAACATCATCTCCTCAGGCTCAAGAAACAATGGTGAACAACAATTTGAGTGAGATTCATCAACTTGGGTCTGCCACAAGCTCATATGGTGGCAACTCACTGGTCCAATGCTCAAACTTTGCACCTTCAAACTATCAACTAAGTTGGGTGTTCAGGACTAAACTTTCCAATGACAGTAACATCCAAAAGCTAACAACAAGCACAACAACTACATCACTTCCCCTAGGCAACTCGAGTGTTCCTTCTTTGTACAGTTCCCAACACCAACCCCACCAAACATGTTCCTCAGCAAACATGTCAGCCACGGCTTTGTTGCAGAAAGCTGCACAAATTGGATCAAGCTCAAGCGACCCTTCATGGCTTGGGAGCATAGGTTTGAAATGTGGTAGCAGTGCTGCTGCTCAAGGTCAAGATGGGGATAGCAGTAACAAGTTCAGTGGCATGTACGGTTCAAGTTTAGTTCTTAGCACACTTGGGACTGAACCAGATAACTCTGCATGTGACTTGTCACAAATGCACCCTCCCAAACGTAGACACGTACTCAGTGAAGAAAATGGAGGGGGGCAGTTCAGGGATTTCCTCGGTGTTGGTGTGCAAACCATTTGCCACACTTCATCAATCAACAGGTGGATTTGA 1404 0.4594 MLRKMDEGEIITNAFPHNLTASAASNTNNPPPALKRKRNLPGNPDPEAEVVALSPKTLMATNRFLCETCGKGFQRDQNLQLHRRGHNLPWKLKQRTGKEARKRVYVCPEKSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNASSDMNTSLGGNIGYNVIGTSLGHNMATHFSSIFKPVSSTEEETNNQTSRGLPLWMGQTSSPQAQETMVNNNLSEIHQLGSATSSYGGNSLVQCSNFAPSNYQLSWVFRTKLSNDSNIQKLTTSTTTTSLPLGNSSVPSLYSSQHQPHQTCSSANMSATALLQKAAQIGSSSSDPSWLGSIGLKCGSSAAAQGQDGDSSNKFSGMYGSSLVLSTLGTEPDNSACDLSQMHPPKRRHVLSEENGGGQFRDFLGVGVQTICHTSSINRWI 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01330 467 FunFam protein indeterminate-domain 5, chloroplastic-like 118 197 - -
Viun11g01330 467 SUPERFAMILY beta-beta-alpha zinc fingers 63 160 IPR036236 -
Viun11g01330 467 MobiDBLite consensus disorder prediction 17 47 - -
Viun11g01330 467 Gene3D Classic Zinc Finger 97 188 - -
Viun11g01330 467 MobiDBLite consensus disorder prediction 17 33 - -
Viun11g01330 467 MobiDBLite consensus disorder prediction 237 264 - -
Viun11g01330 467 Gene3D Classic Zinc Finger 60 87 - -
Viun11g01330 467 FunFam protein indeterminate-domain 12-like 43 111 - -
Viun11g01330 467 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 455 IPR031140 -
Viun11g01330 467 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Viun11g01330 467 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01330 Viun-Chr11 29101858 29104618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01330 31 467 IDZ Gene Family AT1G03840 52.066 1.47e-142 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun11g01330 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01330 K25870 - gmx:100790620 744.191