Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01291 ATGCATCCTGCATGTGCGGCATGCAAGCATCAAAGGAAGAAATGCAGTGAAAACTGCATATTGGCACCTTACTTTCCATCAAACAGAAGCCGTGAGTTTCACGCAGTGCACAAGGTTTTTGGTGTGAGCAACATAACGAAGTTGGTAAAGAATGCAAGAGAGGAGGATAGAAGAAGAGTGGTGGATTCATTGACATGGGAAGCATGTTGCAGACAAAGAGACCCTATTCATGGCCCTTATGGAGAGTACACAAAGGTTTACAATGAGTACAAGAAAGTGTTGGATGAACTCAAGAGATTCAGAAGCCAACACCAGATGTTGCAGTTTCCCTCTCTAGGATTCAAGTCTGTGCAAGATTTCATTGCTTGCAAAGGAGAAGAGAAAGCAGAAGAAGATTATCTGCATGGGAAAAAGAATGCTATTGTTGATTCTGATATTTACAACACTTATTGTTCAAATTATTTGCAAGAGTTTCAGAATCTCAGGCCTGAAGTTGTCATACCCTTTCAGCATCACTCTCAACCATACTACATTACAGGTATTGTTTAG 549 0.408 MHPACAACKHQRKKCSENCILAPYFPSNRSREFHAVHKVFGVSNITKLVKNAREEDRRRVVDSLTWEACCRQRDPIHGPYGEYTKVYNEYKKVLDELKRFRSQHQMLQFPSLGFKSVQDFIACKGEEKAEEDYLHGKKNAIVDSDIYNTYCSNYLQEFQNLRPEVVIPFQHHSQPYYITGIV 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01291 182 ProSiteProfiles LOB domain profile. 3 104 IPR004883 -
Viun11g01291 182 Pfam Lateral organ boundaries (LOB) domain 4 99 IPR004883 -
Viun11g01291 182 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01291 Viun-Chr11 27792388 27792936 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01291 2 102 AS2 family AT1G06280 57.426 1.05e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Viun11g01291 LOB 4.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01291 - - vra:106780610 349.362