Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01282 ATGGATATCTTCCACAATGATCATCAAGAACATGACCTCCCATATGTTCCAAACAGTGACGACTCAGACAACACCAGCAACGAAAACAAAAAAATACTCTACATATCCATGGTTTCCTTCACAGTTGTCTTGTTCCTCGTCTTCTCCCTCTACGTCTACGCGCGGTGCATGCTCACGCGCCGGTCCCGCCACCGTGCCTCCGTTCGCCAACTCACCCTTGCAGCCCTTCATGTCTCCGACATCAACGCTGCAAACCGTAGGATCGAACCTGCAAATACAGGGCTCGATCCTGGCATAGTAGCGTCGCTGCCAACCTTCACCGTGAAGGCAAAGGTTTTAAGAGATGGTGGTGGTGATAATAATAACAGTGGCGGTGGTGATGCTTCATCGGTAATGGAGTGTGTTGTGTGCTTGAATGCCCTAGAAGGTGAAGAAAAAGTGAAGCTGCTACCCAACTGTAACCACTTTTTTCATGTTAGTTGTATTGACATGTGGCTTGGTTCTCACTCTACGTGTCCTCTTTGTCGAGCCGAGGTGAAACCTCGGATCCAACCACATGGTCGTGAAGATCCTGTTAGTCTTGTTCTTGATGATGCACCACCTCCTGTGGTTGATGATGGTGAATCTTTCAAAGGTAATGGTTCGATTTCACGGTTGAGCTCTTTTAGAAGGATGCTTAGCAGGGAAAGATCTTCCAGAAGAGTTCAACCGAATGGCCATGATGAGGATGGTGGTGTTGATCATGATTTGGAGAGACAATGA 762 0.4764 MDIFHNDHQEHDLPYVPNSDDSDNTSNENKKILYISMVSFTVVLFLVFSLYVYARCMLTRRSRHRASVRQLTLAALHVSDINAANRRIEPANTGLDPGIVASLPTFTVKAKVLRDGGGDNNNSGGGDASSVMECVVCLNALEGEEKVKLLPNCNHFFHVSCIDMWLGSHSTCPLCRAEVKPRIQPHGREDPVSLVLDDAPPPVVDDGESFKGNGSISRLSSFRRMLSRERSSRRVQPNGHDEDGGVDHDLERQ 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01282 253 ProSiteProfiles Zinc finger RING-type profile. 134 176 IPR001841 -
Viun11g01282 253 SUPERFAMILY RING/U-box 133 183 - -
Viun11g01282 253 MobiDBLite consensus disorder prediction 1 17 - -
Viun11g01282 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 183 IPR013083 -
Viun11g01282 253 CDD RING-H2_EL5-like 133 176 - -
Viun11g01282 253 MobiDBLite consensus disorder prediction 227 253 - -
Viun11g01282 253 SMART ring_2 134 175 IPR001841 -
Viun11g01282 253 PANTHER RING-H2 FINGER PROTEIN ATL16 17 181 IPR044600 GO:0016567|GO:0016740
Viun11g01282 253 MobiDBLite consensus disorder prediction 186 215 - -
Viun11g01282 253 Pfam Ring finger domain 133 176 IPR001841 -
Viun11g01282 253 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01282 Viun-Chr11 27723263 27724389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01282 4 253 C3H Transcription Factor Family AT2G42360 37.165 1.74e-43 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01282 K19038 - gmx:100783358 275.789