Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01278 ATGAGGAGCAGTGTAGGAGATATTGTTCAAGTGGAAGGAGGACACATTGTTAGGTCCTCGGGAAGAAAAGATCGGCACAGCAAGGTGTATACTTCCAAAGGGCCTCGTGATCGCCGGGTTAGACTCTCAGCACACACAGCCATTGAGTTCTATGACGTTCAAGACAGACTTGGCTATGACAGACCAAGCAAGGCTGTGGACTGGCTCATCAAGAAGGCAAAGTCTTCCATTGACAAGCTTGCTGAGCTTCCTCCATGGCATCCACCTACTCATGATGAGGAAAAGCAGAATGATGCTGCAGGATCAAGTGGAATCGTGGCCGTTGAACAACAACAAGAAGAACATCATCATCATCAACAACAACAGTCAGAGTCTTGTGGCTACAACTTTCAGCTCCAGAGGCAACTGGGGGCCTTTATTTCTACCCATGTTGACACTGACCCCATCAATTTTCAAACCAACAACTCCTCGGAAGATCTTGGCCTATCTCTCCACTGTTTCCAAGACCACCCTGGCCTTATTAATTGGCCATCTCAACAAGGTGCAAATCAAGCACCTCCTTCAAATGAACACCAAATCCAAACCCTTTTTGCTGGCTCAACCCCAGTTGCGTTTGAGAACCATTATCAAAGAACTGTGACTTGGAACAATGAAGCAACAACCGGGGATCATGTGAGCAGAATGGGGTTCTTTCTCAACTCACACCCATTTCTAGGCCAAGCTTCTGCTTCAGCTTATGCCCAAAGTGAGACCCTTCAGTCCAGTTTTTCATTTCCGGTGACTTCCTCTGAGCATCAGAGGCCCCAGCCAGTTCACCAACCTTCCATCTTTGGCAGCAGGTTTGTCTCTGATGGGTTAGCCGGGTTCTGCATTCCAGATAGAATTCAAAGTGTGGAAGAGAACCATGGAGTTGCTTCCAATAGGCCATCTTCTTCTCCTAGTTCTATCCACTGA 954 0.4748 MRSSVGDIVQVEGGHIVRSSGRKDRHSKVYTSKGPRDRRVRLSAHTAIEFYDVQDRLGYDRPSKAVDWLIKKAKSSIDKLAELPPWHPPTHDEEKQNDAAGSSGIVAVEQQQEEHHHHQQQQSESCGYNFQLQRQLGAFISTHVDTDPINFQTNNSSEDLGLSLHCFQDHPGLINWPSQQGANQAPPSNEHQIQTLFAGSTPVAFENHYQRTVTWNNEATTGDHVSRMGFFLNSHPFLGQASASAYAQSETLQSSFSFPVTSSEHQRPQPVHQPSIFGSRFVSDGLAGFCIPDRIQSVEENHGVASNRPSSSPSSIH 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01278 317 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 17 273 IPR005333 GO:0003700
Viun11g01278 317 Pfam TCP family transcription factor 21 124 IPR017887 -
Viun11g01278 317 MobiDBLite consensus disorder prediction 1 38 - -
Viun11g01278 317 MobiDBLite consensus disorder prediction 17 38 - -
Viun11g01278 317 ProSiteProfiles TCP domain profile. 22 80 IPR017887 -
Viun11g01278 317 MobiDBLite consensus disorder prediction 80 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01278 Viun-Chr11 27715628 27718258 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01278 5 314 TCP Transcription Factor Family AT1G53230 37.500 8.48e-48 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Viun11g01278 TCP 1.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01278 - - vun:114168475 613.994