Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01233 ATGGAAATGGAGGAATTTTTATGGGGTGGTGACATTGATGGGGATGTTCCTAAGGGGAACAGTGATGGTTTTGAAGGAAGCAGTGGAGTGATTGGAAGTGGGTGTGGTTCATCTTTCTCTCTGGTTTTGGATAGGGAGAGAGGGGAGCTTGTGGAGGCTCCTGTGAAATTGGAAAGAAAAGGGTTGTCCAGTGAGAGAAGCACTGAAGCTTTGAAGAACCATAGTGAGGCAGAGAGGAGAAGGAGGGCAAGGATTAATGCACATCTTGATACACTTCGCAGTGTCATTCCAGGTGCTATGAAGATGGACAAAGCATCATTACTTGGTGAGGTTATCAGACATTTGAAAGAGCTGAAAAGGAATGCAGCACAAGCTTGTGAAGGTTTGATGATACCAAAGGACAATGATGAAATAAGTGTTGAAGAACAAGAGGGTGGGTTGAATGGTTTTCCTTATTCAATTAGAGCATCACTGTGCTGTGAATATAAACCTGGCCTATTGTCTGATATAAGACAAGCACTGGATTCTCTTCATCTTATGATAACAAGGGCTGACATTGCAACCTTAGAAGGCAGAATGAAGAATGTATTTGTGATCATTAGCTGCAAAGAACACAACTTTGAAGATGCTTCATACCGTCAGTTTCTGGCTGGTTCTGTTCACCAAGCTCTTAGGTCTGTGCTGAATAGATTTTCTGTTTCACAGGACATTTTGGGAACCAGGAAAAGAAGAAGGATTTCTATATTCAGTTCTTCATCTTTAGAAGATTTCTTGTAA 777 0.4157 MEMEEFLWGGDIDGDVPKGNSDGFEGSSGVIGSGCGSSFSLVLDRERGELVEAPVKLERKGLSSERSTEALKNHSEAERRRRARINAHLDTLRSVIPGAMKMDKASLLGEVIRHLKELKRNAAQACEGLMIPKDNDEISVEEQEGGLNGFPYSIRASLCCEYKPGLLSDIRQALDSLHLMITRADIATLEGRMKNVFVIISCKEHNFEDASYRQFLAGSVHQALRSVLNRFSVSQDILGTRKRRRISIFSSSSLEDFL 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01233 258 Pfam Helix-loop-helix DNA-binding domain 73 118 IPR011598 GO:0046983
Viun11g01233 258 PANTHER TRANSCRIPTION FACTOR BHLH30 45 250 IPR045847 GO:0003700|GO:0006355
Viun11g01233 258 CDD ACT_UUR-ACR-like 157 228 - -
Viun11g01233 258 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 69 118 IPR011598 GO:0046983
Viun11g01233 258 SMART finulus 75 124 IPR011598 GO:0046983
Viun11g01233 258 Gene3D - 63 126 IPR036638 GO:0046983
Viun11g01233 258 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 72 122 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01233 Viun-Chr11 27460364 27462238 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01233 23 247 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 36.250 7.78e-32 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun11g01233 HLH 7.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01233 - - gmx:100788819 427.943