Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01227 ATGTCTGGGCTTGATGAGTGCACAATAGTGAGAGGAAGTAACATAGATTCTCATTACATAGTAAATGCCTACGACTATGGAATGACAGAATATGAAAGAGTTGGGCATCAACGTCTTCCACTCTCATATACTTCTTCAGTTGCTCCTCGTGATGCAAGGCACACTGCAACACCTATCCCCTTGGTACCAAGATTTGGATTCCAAGATCCAACTCCTCCATTAGAGAATGTAAGAACGGGTCCTCCAAGATATGATGAATTTTCCCATCCGATTTACCCAACTTCCTTTTATTATTACTCCATCCACTTTGATTATCCATTACGTCTTGTTCCATCGTATACACTTCCAACAAATCCTTCAACCTCTTCCTCAATGCCCATACAACATGCACCATTTACACATCACTCTCAACCTCTTAGACACAACATGGACATTCAGGACATGTCATATGAGGACATTCAGAACATGTCATATGAGGAACTTAATGAGTTAGCTGAACGGATTGGCAAGGTAAACACGGGTTTGCCCGATGAAATTATTGCAAGACAAATGAAGACAGAAATTTATCAACTTCCTAATCACTCGGAGGAACAAGAAGTTGATCTTTGCATAATATGCCAGGATGAATATAAGAACAAAGACCAAATTGGAATTCTTCAATGCGGACATCGATACCACTCAGATTGTATAACCACATGGTTGCATGAGAAAAATGTTTGTCCCATCTGCAAATCACAAGCATTGACAATTCAATAG 756 0.3981 MSGLDECTIVRGSNIDSHYIVNAYDYGMTEYERVGHQRLPLSYTSSVAPRDARHTATPIPLVPRFGFQDPTPPLENVRTGPPRYDEFSHPIYPTSFYYYSIHFDYPLRLVPSYTLPTNPSTSSSMPIQHAPFTHHSQPLRHNMDIQDMSYEDIQNMSYEELNELAERIGKVNTGLPDEIIARQMKTEIYQLPNHSEEQEVDLCIICQDEYKNKDQIGILQCGHRYHSDCITTWLHEKNVCPICKSQALTIQ 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01227 251 CDD RING-H2_RNF24-like 201 247 - -
Viun11g01227 251 SUPERFAMILY RING/U-box 190 248 - -
Viun11g01227 251 SMART ring_2 203 243 IPR001841 -
Viun11g01227 251 ProSiteProfiles Zinc finger RING-type profile. 203 244 IPR001841 -
Viun11g01227 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 180 248 IPR013083 -
Viun11g01227 251 Pfam Ring finger domain 202 244 IPR001841 -
Viun11g01227 251 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 45 248 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01227 Viun-Chr11 27317756 27318837 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01227 152 248 C3H Transcription Factor Family AT2G15530 49.000 6.78e-28 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01227 K19041 - pvu:PHAVU_011G149000g 197.978