Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01222 ATGGCTCTGCATTCTCCGTGCACGACGCTGTTTTCTCGCTTCTGGCAGCCACGCCGTGACTCACGGTGGAGGAGAAGAAGGTATGGCCAGCAGCGACGTGGTGGCCAGCGTCTTTCGTGGTGGCTAGCGGCGATTCTCTGCAAAAACATTGCTGCTACTTTTGTTGGGATTCACCTGCTTTTTCTTAGGAAGGGAATCTGGTTCGGAAACGAGGGAAAGACGTGGATTAACTTGGAAAGCATAGAATTTAAAGCAAGAAACATGTCTTGGCTGGATCAGTGCACAACAGTGAGAGGAAGTAATATAGATTCCCACTACATAGTAAATGCCAACGACTATGAAATGACAGAATATGAAAGGGTTGGGCATCAACATCTTCCACTCTCATCTACTTCTTCACTTGCTCCTCGTAATGCAAGGCACACTGCAACTGCCATCCCCTTGGTACCAAGATTTGGGTTGCAAGTTCCAACTCCTCCATTAGAGAATGTAAGAGTGAGTCCCCGAAGATATCATGAAACAGCGGGAAGTAGAAGCAGCCACAGACATCCCCATACGTTGTACCCTTCCTTTTATTATTACTCCATCCACTTTGATTATCCATTACGTCTTGTTCCATCGTATACACTTCCAACAAATCCTTCAACCTCTTCCTCAATGCCCATACAACATGCACCATTTGCACATCACTCTCAACCTCTTAGACACAACATGGACATTCAGGACATGTCATATGAGGACATTCAGAACATGTCATATGAGGATCTTCTTGACTTAGCTGAACGAATTGGCAAGGTAGACACGGGTTTGCCTGATGAAATTATTGCAAGACAAATGAAGACAGAAACTTATCAACCTCCTAATCACTTGGAAGAGGCAACGTCTCAGGAACAAGAAATTGATCTTTGCGTGATATGTCAGGATGAATATAAGATCCAAGAATCAATTGGAATTCTTCAATGCGGACATCGATACCACACAGATTGTATAACCACATGGTTACATGAGAAAAATGAGTGTCCCATCTGCAAATCAAAAGCATTGAATATAGAATAG 1056 0.4366 MALHSPCTTLFSRFWQPRRDSRWRRRRYGQQRRGGQRLSWWLAAILCKNIAATFVGIHLLFLRKGIWFGNEGKTWINLESIEFKARNMSWLDQCTTVRGSNIDSHYIVNANDYEMTEYERVGHQHLPLSSTSSLAPRNARHTATAIPLVPRFGLQVPTPPLENVRVSPRRYHETAGSRSSHRHPHTLYPSFYYYSIHFDYPLRLVPSYTLPTNPSTSSSMPIQHAPFAHHSQPLRHNMDIQDMSYEDIQNMSYEDLLDLAERIGKVDTGLPDEIIARQMKTETYQPPNHLEEATSQEQEIDLCVICQDEYKIQESIGILQCGHRYHTDCITTWLHEKNECPICKSKALNIE 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01222 351 SUPERFAMILY RING/U-box 302 347 - -
Viun11g01222 351 CDD RING-H2_RNF24-like 301 347 - -
Viun11g01222 351 Pfam Ring finger domain 302 344 IPR001841 -
Viun11g01222 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 348 IPR013083 -
Viun11g01222 351 ProSiteProfiles Zinc finger RING-type profile. 303 344 IPR001841 -
Viun11g01222 351 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 125 348 IPR045191 GO:0061630
Viun11g01222 351 SMART ring_2 303 343 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01222 Viun-Chr11 27139815 27144480 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01222 247 348 C3H Transcription Factor Family AT2G15530 49.038 2.03e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01222 K19041 - pvu:PHAVU_011G149000g 201.445